Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23674 | 3' | -54 | NC_005261.1 | + | 59612 | 0.74 | 0.594308 |
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Target: 5'- gCGGCGc--GGCGGAUGAGCgccaGGACc -3' miRNA: 3'- -GCCGUuauCCGUCUACUCGag--CCUGc -5' |
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| 23674 | 3' | -54 | NC_005261.1 | + | 16160 | 0.74 | 0.573583 |
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Target: 5'- cCGGCA--GGGCAGuaggGGGCgCGGGCGu -3' miRNA: 3'- -GCCGUuaUCCGUCua--CUCGaGCCUGC- -5' |
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| 23674 | 3' | -54 | NC_005261.1 | + | 110806 | 0.75 | 0.502745 |
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Target: 5'- gGGCGAggaggcggGGGCGGAcgGGGCcgCGGACGa -3' miRNA: 3'- gCCGUUa-------UCCGUCUa-CUCGa-GCCUGC- -5' |
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| 23674 | 3' | -54 | NC_005261.1 | + | 24395 | 0.75 | 0.49292 |
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Target: 5'- uCGGCGGcgGGGCGGuccuggGGGCUCGGAUc -3' miRNA: 3'- -GCCGUUa-UCCGUCua----CUCGAGCCUGc -5' |
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| 23674 | 3' | -54 | NC_005261.1 | + | 109860 | 0.76 | 0.473543 |
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Target: 5'- gCGGCuccuggGGGCAGcgGGGCccgCGGGCGg -3' miRNA: 3'- -GCCGuua---UCCGUCuaCUCGa--GCCUGC- -5' |
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| 23674 | 3' | -54 | NC_005261.1 | + | 1014 | 0.8 | 0.288613 |
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Target: 5'- gGGCGggGGGCGGGUGGGCUuuugcggagggcggCGGGCGg -3' miRNA: 3'- gCCGUuaUCCGUCUACUCGA--------------GCCUGC- -5' |
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| 23674 | 3' | -54 | NC_005261.1 | + | 27081 | 1.08 | 0.004317 |
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Target: 5'- gCGGCAAUAGGCAGAUGAGCUCGGACGc -3' miRNA: 3'- -GCCGUUAUCCGUCUACUCGAGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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