Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 32926 | 0.67 | 0.91859 |
Target: 5'- gGGCGGcGGGCGGGggggGGGCggGGAgGg -3' miRNA: 3'- gCCGUUaUCCGUCUa---CUCGagCCUgC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 32077 | 0.67 | 0.900079 |
Target: 5'- gCGGCGcugGGGCucGggGAGC-CGGACu -3' miRNA: 3'- -GCCGUua-UCCGu-CuaCUCGaGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 27369 | 0.69 | 0.840415 |
Target: 5'- cCGGCGcgAGGCcGGUGGGCagGGGg- -3' miRNA: 3'- -GCCGUuaUCCGuCUACUCGagCCUgc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 27081 | 1.08 | 0.004317 |
Target: 5'- gCGGCAAUAGGCAGAUGAGCUCGGACGc -3' miRNA: 3'- -GCCGUUAUCCGUCUACUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 26879 | 0.67 | 0.906495 |
Target: 5'- nGGgGGUGGGUGGGgggGGGCggGGGCGc -3' miRNA: 3'- gCCgUUAUCCGUCUa--CUCGagCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 26843 | 0.7 | 0.777822 |
Target: 5'- gGGCGGUGGGCGGucaaaacggGAGCgugaaugGGGCGg -3' miRNA: 3'- gCCGUUAUCCGUCua-------CUCGag-----CCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 24395 | 0.75 | 0.49292 |
Target: 5'- uCGGCGGcgGGGCGGuccuggGGGCUCGGAUc -3' miRNA: 3'- -GCCGUUa-UCCGUCua----CUCGAGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 24118 | 0.71 | 0.748774 |
Target: 5'- gGGCccgAGGCGGGgguggGGGCUgGGugGg -3' miRNA: 3'- gCCGuuaUCCGUCUa----CUCGAgCCugC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 24017 | 0.67 | 0.924266 |
Target: 5'- aGGgGAggGGGCGGAgcgcgGGGUUCGGGUGg -3' miRNA: 3'- gCCgUUa-UCCGUCUa----CUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 23887 | 0.67 | 0.900079 |
Target: 5'- gGGCGGgccGGCuaGGGUGGGCUCgcuGGGCu -3' miRNA: 3'- gCCGUUau-CCG--UCUACUCGAG---CCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 23848 | 0.7 | 0.796524 |
Target: 5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3' miRNA: 3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 23791 | 0.7 | 0.796524 |
Target: 5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3' miRNA: 3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 23479 | 0.67 | 0.917425 |
Target: 5'- gCGGCGAgugcgcgggcccgccUGGGCAGGcgcGGGCccugggagcacgcggUCGGGCGa -3' miRNA: 3'- -GCCGUU---------------AUCCGUCUa--CUCG---------------AGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 17063 | 0.66 | 0.952704 |
Target: 5'- gCGGCcGUccuggaaGGGCgacgGGAUGGGCcCGGugGu -3' miRNA: 3'- -GCCGuUA-------UCCG----UCUACUCGaGCCugC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 16160 | 0.74 | 0.573583 |
Target: 5'- cCGGCA--GGGCAGuaggGGGCgCGGGCGu -3' miRNA: 3'- -GCCGUuaUCCGUCua--CUCGaGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 15959 | 0.68 | 0.886525 |
Target: 5'- gGGCGAguggcGGGCGGGggaGGGCcCGGGCc -3' miRNA: 3'- gCCGUUa----UCCGUCUa--CUCGaGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 14130 | 0.71 | 0.718765 |
Target: 5'- gGGCGGUGGGCAGuc--GCUCgcgaGGACGc -3' miRNA: 3'- gCCGUUAUCCGUCuacuCGAG----CCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 13716 | 0.69 | 0.840415 |
Target: 5'- gGGCGGggguggGGGUggGGGUGGGCUUGGcCGc -3' miRNA: 3'- gCCGUUa-----UCCG--UCUACUCGAGCCuGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 13091 | 0.69 | 0.840415 |
Target: 5'- uCGGCGGgcGGCGGGcucGGCUCGGGgGc -3' miRNA: 3'- -GCCGUUauCCGUCUac-UCGAGCCUgC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 12771 | 0.73 | 0.646485 |
Target: 5'- gCGGCGGU-GGCGGG-GGGCUCGucGGCGa -3' miRNA: 3'- -GCCGUUAuCCGUCUaCUCGAGC--CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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