miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23674 3' -54 NC_005261.1 + 16160 0.74 0.573583
Target:  5'- cCGGCA--GGGCAGuaggGGGCgCGGGCGu -3'
miRNA:   3'- -GCCGUuaUCCGUCua--CUCGaGCCUGC- -5'
23674 3' -54 NC_005261.1 + 110806 0.75 0.502745
Target:  5'- gGGCGAggaggcggGGGCGGAcgGGGCcgCGGACGa -3'
miRNA:   3'- gCCGUUa-------UCCGUCUa-CUCGa-GCCUGC- -5'
23674 3' -54 NC_005261.1 + 24395 0.75 0.49292
Target:  5'- uCGGCGGcgGGGCGGuccuggGGGCUCGGAUc -3'
miRNA:   3'- -GCCGUUa-UCCGUCua----CUCGAGCCUGc -5'
23674 3' -54 NC_005261.1 + 109860 0.76 0.473543
Target:  5'- gCGGCuccuggGGGCAGcgGGGCccgCGGGCGg -3'
miRNA:   3'- -GCCGuua---UCCGUCuaCUCGa--GCCUGC- -5'
23674 3' -54 NC_005261.1 + 1014 0.8 0.288613
Target:  5'- gGGCGggGGGCGGGUGGGCUuuugcggagggcggCGGGCGg -3'
miRNA:   3'- gCCGUuaUCCGUCUACUCGA--------------GCCUGC- -5'
23674 3' -54 NC_005261.1 + 84109 0.72 0.708595
Target:  5'- gGGCGggAUGGGgAGggGGGCagCGGGCGg -3'
miRNA:   3'- gCCGU--UAUCCgUCuaCUCGa-GCCUGC- -5'
23674 3' -54 NC_005261.1 + 2814 0.71 0.718765
Target:  5'- gGGCc--GGGCGGccccagcccGAGCUCGGGCGg -3'
miRNA:   3'- gCCGuuaUCCGUCua-------CUCGAGCCUGC- -5'
23674 3' -54 NC_005261.1 + 121792 0.7 0.814607
Target:  5'- cCGGCGGgcUGGGCAGGgggcgcguggcUGGGCUcugCGGGCc -3'
miRNA:   3'- -GCCGUU--AUCCGUCU-----------ACUCGA---GCCUGc -5'
23674 3' -54 NC_005261.1 + 111466 0.7 0.811937
Target:  5'- cCGGCGAggccaaaaggcGGGCGGGUGAGauggcaagcgaggggCGGACGa -3'
miRNA:   3'- -GCCGUUa----------UCCGUCUACUCga-------------GCCUGC- -5'
23674 3' -54 NC_005261.1 + 123153 0.7 0.805647
Target:  5'- aGGCAuacgaGGGCGGGgcGGGCgcgCGGGCGu -3'
miRNA:   3'- gCCGUua---UCCGUCUa-CUCGa--GCCUGC- -5'
23674 3' -54 NC_005261.1 + 127909 0.7 0.796524
Target:  5'- gGGCc-UGGGCu--UGGGCUCGGGCc -3'
miRNA:   3'- gCCGuuAUCCGucuACUCGAGCCUGc -5'
23674 3' -54 NC_005261.1 + 23848 0.7 0.796524
Target:  5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3'
miRNA:   3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5'
23674 3' -54 NC_005261.1 + 23791 0.7 0.796524
Target:  5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3'
miRNA:   3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5'
23674 3' -54 NC_005261.1 + 34198 0.7 0.787246
Target:  5'- gGGCcggAGGCAGAcGGcGCgUCGGACGc -3'
miRNA:   3'- gCCGuuaUCCGUCUaCU-CG-AGCCUGC- -5'
23674 3' -54 NC_005261.1 + 98564 0.7 0.777822
Target:  5'- cCGGCGGgcGGCcGuccuccgcGGGCUCGGGCGa -3'
miRNA:   3'- -GCCGUUauCCGuCua------CUCGAGCCUGC- -5'
23674 3' -54 NC_005261.1 + 26843 0.7 0.777822
Target:  5'- gGGCGGUGGGCGGucaaaacggGAGCgugaaugGGGCGg -3'
miRNA:   3'- gCCGUUAUCCGUCua-------CUCGag-----CCUGC- -5'
23674 3' -54 NC_005261.1 + 12362 0.71 0.758577
Target:  5'- gCGGCAAccGGCGcgucuucgauGGUGAGCUCgaGGAUGg -3'
miRNA:   3'- -GCCGUUauCCGU----------CUACUCGAG--CCUGC- -5'
23674 3' -54 NC_005261.1 + 24118 0.71 0.748774
Target:  5'- gGGCccgAGGCGGGgguggGGGCUgGGugGg -3'
miRNA:   3'- gCCGuuaUCCGUCUa----CUCGAgCCugC- -5'
23674 3' -54 NC_005261.1 + 97591 0.71 0.718765
Target:  5'- gGGCGGagcGGGCGGAgcGGGCggagCGGGCGg -3'
miRNA:   3'- gCCGUUa--UCCGUCUa-CUCGa---GCCUGC- -5'
23674 3' -54 NC_005261.1 + 14130 0.71 0.718765
Target:  5'- gGGCGGUGGGCAGuc--GCUCgcgaGGACGc -3'
miRNA:   3'- gCCGUUAUCCGUCuacuCGAG----CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.