miRNA display CGI


Results 61 - 67 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23674 3' -54 NC_005261.1 + 23791 0.7 0.796524
Target:  5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3'
miRNA:   3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5'
23674 3' -54 NC_005261.1 + 34198 0.7 0.787246
Target:  5'- gGGCcggAGGCAGAcGGcGCgUCGGACGc -3'
miRNA:   3'- gCCGuuaUCCGUCUaCU-CG-AGCCUGC- -5'
23674 3' -54 NC_005261.1 + 98564 0.7 0.777822
Target:  5'- cCGGCGGgcGGCcGuccuccgcGGGCUCGGGCGa -3'
miRNA:   3'- -GCCGUUauCCGuCua------CUCGAGCCUGC- -5'
23674 3' -54 NC_005261.1 + 26843 0.7 0.777822
Target:  5'- gGGCGGUGGGCGGucaaaacggGAGCgugaaugGGGCGg -3'
miRNA:   3'- gCCGUUAUCCGUCua-------CUCGag-----CCUGC- -5'
23674 3' -54 NC_005261.1 + 12362 0.71 0.758577
Target:  5'- gCGGCAAccGGCGcgucuucgauGGUGAGCUCgaGGAUGg -3'
miRNA:   3'- -GCCGUUauCCGU----------CUACUCGAG--CCUGC- -5'
23674 3' -54 NC_005261.1 + 24118 0.71 0.748774
Target:  5'- gGGCccgAGGCGGGgguggGGGCUgGGugGg -3'
miRNA:   3'- gCCGuuaUCCGUCUa----CUCGAgCCugC- -5'
23674 3' -54 NC_005261.1 + 27081 1.08 0.004317
Target:  5'- gCGGCAAUAGGCAGAUGAGCUCGGACGc -3'
miRNA:   3'- -GCCGUUAUCCGUCUACUCGAGCCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.