Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 23791 | 0.7 | 0.796524 |
Target: 5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3' miRNA: 3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 34198 | 0.7 | 0.787246 |
Target: 5'- gGGCcggAGGCAGAcGGcGCgUCGGACGc -3' miRNA: 3'- gCCGuuaUCCGUCUaCU-CG-AGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 98564 | 0.7 | 0.777822 |
Target: 5'- cCGGCGGgcGGCcGuccuccgcGGGCUCGGGCGa -3' miRNA: 3'- -GCCGUUauCCGuCua------CUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 26843 | 0.7 | 0.777822 |
Target: 5'- gGGCGGUGGGCGGucaaaacggGAGCgugaaugGGGCGg -3' miRNA: 3'- gCCGUUAUCCGUCua-------CUCGag-----CCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 12362 | 0.71 | 0.758577 |
Target: 5'- gCGGCAAccGGCGcgucuucgauGGUGAGCUCgaGGAUGg -3' miRNA: 3'- -GCCGUUauCCGU----------CUACUCGAG--CCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 24118 | 0.71 | 0.748774 |
Target: 5'- gGGCccgAGGCGGGgguggGGGCUgGGugGg -3' miRNA: 3'- gCCGuuaUCCGUCUa----CUCGAgCCugC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 27081 | 1.08 | 0.004317 |
Target: 5'- gCGGCAAUAGGCAGAUGAGCUCGGACGc -3' miRNA: 3'- -GCCGUUAUCCGUCUACUCGAGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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