Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 138204 | 0.69 | 0.848634 |
Target: 5'- gGGCGggGGGCAGGgcgGAcggcgGCUCGGcCGc -3' miRNA: 3'- gCCGUuaUCCGUCUa--CU-----CGAGCCuGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 136565 | 0.68 | 0.893421 |
Target: 5'- gGGCAGaAGGCgcGGGUGGGC--GGGCGc -3' miRNA: 3'- gCCGUUaUCCG--UCUACUCGagCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 135093 | 0.67 | 0.906495 |
Target: 5'- gCGGCcc--GGCGGcgGAGCgcgaggCGGACc -3' miRNA: 3'- -GCCGuuauCCGUCuaCUCGa-----GCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 129735 | 0.67 | 0.906495 |
Target: 5'- gCGGCA--GGGCGGcgGGGCcCGGcCu -3' miRNA: 3'- -GCCGUuaUCCGUCuaCUCGaGCCuGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 129606 | 0.68 | 0.879394 |
Target: 5'- gCGGCAAUuucGCGGcgGGG-UCGGGCGc -3' miRNA: 3'- -GCCGUUAuc-CGUCuaCUCgAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 128886 | 0.68 | 0.872034 |
Target: 5'- aGGCGG-GGGcCGGGUGGGaggCGGGCGu -3' miRNA: 3'- gCCGUUaUCC-GUCUACUCga-GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 128070 | 0.68 | 0.893421 |
Target: 5'- uGGCGGgcGGGCGGgcGAGCgagcggguuaaCGGGCGa -3' miRNA: 3'- gCCGUUa-UCCGUCuaCUCGa----------GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 127909 | 0.7 | 0.796524 |
Target: 5'- gGGCc-UGGGCu--UGGGCUCGGGCc -3' miRNA: 3'- gCCGuuAUCCGucuACUCGAGCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 123153 | 0.7 | 0.805647 |
Target: 5'- aGGCAuacgaGGGCGGGgcGGGCgcgCGGGCGu -3' miRNA: 3'- gCCGUua---UCCGUCUa-CUCGa--GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 121792 | 0.7 | 0.814607 |
Target: 5'- cCGGCGGgcUGGGCAGGgggcgcguggcUGGGCUcugCGGGCc -3' miRNA: 3'- -GCCGUU--AUCCGUCU-----------ACUCGA---GCCUGc -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 114319 | 0.67 | 0.91859 |
Target: 5'- cCGGCAGUccggcgcaAGGUGGAcuGGCUCGaGCGg -3' miRNA: 3'- -GCCGUUA--------UCCGUCUacUCGAGCcUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 111466 | 0.7 | 0.811937 |
Target: 5'- cCGGCGAggccaaaaggcGGGCGGGUGAGauggcaagcgaggggCGGACGa -3' miRNA: 3'- -GCCGUUa----------UCCGUCUACUCga-------------GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 110806 | 0.75 | 0.502745 |
Target: 5'- gGGCGAggaggcggGGGCGGAcgGGGCcgCGGACGa -3' miRNA: 3'- gCCGUUa-------UCCGUCUa-CUCGa-GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 109860 | 0.76 | 0.473543 |
Target: 5'- gCGGCuccuggGGGCAGcgGGGCccgCGGGCGg -3' miRNA: 3'- -GCCGuua---UCCGUCuaCUCGa--GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 105866 | 0.66 | 0.93487 |
Target: 5'- uCGGCGAUgcgguuGGGCAGGUgcacgaucGAGCacaucucCGGGCGc -3' miRNA: 3'- -GCCGUUA------UCCGUCUA--------CUCGa------GCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 105273 | 0.69 | 0.823394 |
Target: 5'- uCGGCGGgcGGCAGcgccggcGAGCcCGGGCGc -3' miRNA: 3'- -GCCGUUauCCGUCua-----CUCGaGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 98564 | 0.7 | 0.777822 |
Target: 5'- cCGGCGGgcGGCcGuccuccgcGGGCUCGGGCGa -3' miRNA: 3'- -GCCGUUauCCGuCua------CUCGAGCCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 98359 | 0.67 | 0.929692 |
Target: 5'- gCGGgGGUGGGCGc--GGGCUCuGGCGg -3' miRNA: 3'- -GCCgUUAUCCGUcuaCUCGAGcCUGC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 97952 | 0.67 | 0.91859 |
Target: 5'- gCGGCAAcgAGGgAGGUG-GCggCGGAgCGg -3' miRNA: 3'- -GCCGUUa-UCCgUCUACuCGa-GCCU-GC- -5' |
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23674 | 3' | -54 | NC_005261.1 | + | 97744 | 0.73 | 0.625591 |
Target: 5'- uGGCAG-GGGCGGGgcGGGCUCGG-CGg -3' miRNA: 3'- gCCGUUaUCCGUCUa-CUCGAGCCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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