Results 21 - 40 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23674 | 3' | -54 | NC_005261.1 | + | 24395 | 0.75 | 0.49292 |
Target: 5'- uCGGCGGcgGGGCGGuccuggGGGCUCGGAUc -3' miRNA: 3'- -GCCGUUa-UCCGUCua----CUCGAGCCUGc -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 26843 | 0.7 | 0.777822 |
Target: 5'- gGGCGGUGGGCGGucaaaacggGAGCgugaaugGGGCGg -3' miRNA: 3'- gCCGUUAUCCGUCua-------CUCGag-----CCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 26879 | 0.67 | 0.906495 |
Target: 5'- nGGgGGUGGGUGGGgggGGGCggGGGCGc -3' miRNA: 3'- gCCgUUAUCCGUCUa--CUCGagCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 27081 | 1.08 | 0.004317 |
Target: 5'- gCGGCAAUAGGCAGAUGAGCUCGGACGc -3' miRNA: 3'- -GCCGUUAUCCGUCUACUCGAGCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 27369 | 0.69 | 0.840415 |
Target: 5'- cCGGCGcgAGGCcGGUGGGCagGGGg- -3' miRNA: 3'- -GCCGUuaUCCGuCUACUCGagCCUgc -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 32077 | 0.67 | 0.900079 |
Target: 5'- gCGGCGcugGGGCucGggGAGC-CGGACu -3' miRNA: 3'- -GCCGUua-UCCGu-CuaCUCGaGCCUGc -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 32926 | 0.67 | 0.91859 |
Target: 5'- gGGCGGcGGGCGGGggggGGGCggGGAgGg -3' miRNA: 3'- gCCGUUaUCCGUCUa---CUCGagCCUgC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 33609 | 0.67 | 0.929692 |
Target: 5'- cCGGCGc-GGGCGGcgGGGCcCGGGgGc -3' miRNA: 3'- -GCCGUuaUCCGUCuaCUCGaGCCUgC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 34198 | 0.7 | 0.787246 |
Target: 5'- gGGCcggAGGCAGAcGGcGCgUCGGACGc -3' miRNA: 3'- gCCGuuaUCCGUCUaCU-CG-AGCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 35266 | 0.67 | 0.906495 |
Target: 5'- aGGCAGUGGuGguGAcGGGCggugagggaGGACGa -3' miRNA: 3'- gCCGUUAUC-CguCUaCUCGag-------CCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 35692 | 0.72 | 0.676679 |
Target: 5'- cCGGCGagccccgGUGGGCcGG-GGGCUCGGugGc -3' miRNA: 3'- -GCCGU-------UAUCCGuCUaCUCGAGCCugC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 44626 | 0.67 | 0.900079 |
Target: 5'- aGGCGugcAGGuCGGAggagGAGCUCugcgGGGCGg -3' miRNA: 3'- gCCGUua-UCC-GUCUa---CUCGAG----CCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 50998 | 0.72 | 0.688061 |
Target: 5'- gCGGCGcGUGGGCGcGGcggGAGCUCGG-CGa -3' miRNA: 3'- -GCCGU-UAUCCGU-CUa--CUCGAGCCuGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 56971 | 0.68 | 0.893421 |
Target: 5'- cCGGCAGUGguucGGCAGc-GAGCgcgUGGACc -3' miRNA: 3'- -GCCGUUAU----CCGUCuaCUCGa--GCCUGc -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 59612 | 0.74 | 0.594308 |
Target: 5'- gCGGCGc--GGCGGAUGAGCgccaGGACc -3' miRNA: 3'- -GCCGUuauCCGUCUACUCGag--CCUGc -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 69510 | 0.67 | 0.906495 |
Target: 5'- cCGGCGGcGGGCuGccgGAGCUggcgCGGGCGc -3' miRNA: 3'- -GCCGUUaUCCGuCua-CUCGA----GCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 70561 | 0.67 | 0.906495 |
Target: 5'- -cGCA--GGGCGccgcGAaGAGCUCGGGCGc -3' miRNA: 3'- gcCGUuaUCCGU----CUaCUCGAGCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 74515 | 0.66 | 0.953113 |
Target: 5'- gCGGCGccgGGGCc-AUGGcGCUUGGGCGc -3' miRNA: 3'- -GCCGUua-UCCGucUACU-CGAGCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 74855 | 0.68 | 0.872034 |
Target: 5'- gCGGCGcgccGGGCGGAgGAGg-CGGACGc -3' miRNA: 3'- -GCCGUua--UCCGUCUaCUCgaGCCUGC- -5' |
|||||||
23674 | 3' | -54 | NC_005261.1 | + | 82651 | 0.67 | 0.908993 |
Target: 5'- uGGUcGUAGcacgcGCGGAUGAGCgccucgagccgcucgUCGGGCGc -3' miRNA: 3'- gCCGuUAUC-----CGUCUACUCG---------------AGCCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home