Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23674 | 5' | -57.4 | NC_005261.1 | + | 137770 | 0.71 | 0.556459 |
Target: 5'- gGgGUGCgGGGCgCgCCCCCGggCCCCg -3' miRNA: 3'- gUgUACGgUCUG-GaGGGGGUaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 137587 | 0.68 | 0.738043 |
Target: 5'- aGCGcGCC---CCUCCCCCA--CCCCg -3' miRNA: 3'- gUGUaCGGucuGGAGGGGGUaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 133977 | 0.66 | 0.829313 |
Target: 5'- cCGCAacgacGCC-GACCUCCUCag--CCCCg -3' miRNA: 3'- -GUGUa----CGGuCUGGAGGGGguaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 129286 | 0.67 | 0.785387 |
Target: 5'- cCGCGccGCCccGCCcgCCCCCGgcgCCCCg -3' miRNA: 3'- -GUGUa-CGGucUGGa-GGGGGUaa-GGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 121278 | 0.68 | 0.728263 |
Target: 5'- gGCG-GCCGccccGGCCUCgCUCUcgUCCCCg -3' miRNA: 3'- gUGUaCGGU----CUGGAG-GGGGuaAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 119725 | 0.67 | 0.776156 |
Target: 5'- gGCGUGCCcaaccCCUUCCCgCGcgCCCCg -3' miRNA: 3'- gUGUACGGucu--GGAGGGG-GUaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 119304 | 0.67 | 0.794481 |
Target: 5'- aGCGgaggGCgAGGCCUCgCCCucgCCCUu -3' miRNA: 3'- gUGUa---CGgUCUGGAGgGGGuaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 106480 | 0.68 | 0.747732 |
Target: 5'- ----cGCCGGG-CUCCCCUcgUCgCCCu -3' miRNA: 3'- guguaCGGUCUgGAGGGGGuaAG-GGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 105020 | 0.66 | 0.828476 |
Target: 5'- ----cGCCAGGgcgguguCCUCUCCCGcUCCCa -3' miRNA: 3'- guguaCGGUCU-------GGAGGGGGUaAGGGg -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 104961 | 0.7 | 0.626374 |
Target: 5'- gCGCAgGCCGcaacagcGuCCUCCCCCg--CCCCg -3' miRNA: 3'- -GUGUaCGGU-------CuGGAGGGGGuaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 103086 | 0.68 | 0.728263 |
Target: 5'- cCGCGaagGCCGGGCCcagCCCggCCAgcgCCCCc -3' miRNA: 3'- -GUGUa--CGGUCUGGa--GGG--GGUaa-GGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 102467 | 0.7 | 0.617191 |
Target: 5'- gCGCAggcGCCGGACCUCCUCgGcgcgCCgCCg -3' miRNA: 3'- -GUGUa--CGGUCUGGAGGGGgUaa--GG-GG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 88112 | 0.68 | 0.698462 |
Target: 5'- cCGCGcGCCGG-CUUCUucaaCCCAUUCCUCg -3' miRNA: 3'- -GUGUaCGGUCuGGAGG----GGGUAAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 87995 | 0.68 | 0.698462 |
Target: 5'- ----cGCCGGcuCCUCCCCCGgcgggCCCg -3' miRNA: 3'- guguaCGGUCu-GGAGGGGGUaa---GGGg -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 82454 | 0.66 | 0.820853 |
Target: 5'- nCGCGccGCCGuuGCCgCCCCCGgccccgUCCCCg -3' miRNA: 3'- -GUGUa-CGGUc-UGGaGGGGGUa-----AGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 82420 | 0.68 | 0.728263 |
Target: 5'- gCGCcgGCCccGCCguccgcgCCCCCGgccggCCCCg -3' miRNA: 3'- -GUGuaCGGucUGGa------GGGGGUaa---GGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 81392 | 0.68 | 0.72728 |
Target: 5'- ----cGCCGGgcucccgGCCUCCCCagcUCCCCc -3' miRNA: 3'- guguaCGGUC-------UGGAGGGGguaAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 78651 | 0.71 | 0.536562 |
Target: 5'- gCGCGaGCgAGcCCUCCCCCccgUCCUCg -3' miRNA: 3'- -GUGUaCGgUCuGGAGGGGGua-AGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 78097 | 0.67 | 0.776156 |
Target: 5'- gCGCcgGcCCAGGCCccggCCCCgg--CCCCa -3' miRNA: 3'- -GUGuaC-GGUCUGGa---GGGGguaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 77927 | 0.66 | 0.845692 |
Target: 5'- uGCggGCCGG-CUaCCCCUAcggCCCCg -3' miRNA: 3'- gUGuaCGGUCuGGaGGGGGUaa-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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