Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23674 | 5' | -57.4 | NC_005261.1 | + | 22298 | 0.66 | 0.837596 |
Target: 5'- cCGCccGCCuccuCCUCUCUCucuUUCCCCg -3' miRNA: 3'- -GUGuaCGGucu-GGAGGGGGu--AAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 26514 | 0.66 | 0.826794 |
Target: 5'- cCGC-UGCCAcGcacgcgcaccccccCCUCCCCCcUUCUCCg -3' miRNA: 3'- -GUGuACGGUcU--------------GGAGGGGGuAAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 27116 | 1.1 | 0.001536 |
Target: 5'- cCACAUGCCAGACCUCCCCCAUUCCCCc -3' miRNA: 3'- -GUGUACGGUCUGGAGGGGGUAAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 27271 | 0.67 | 0.766798 |
Target: 5'- gGCA-GCCcGGCCggCCCCCGgaccgCCCUc -3' miRNA: 3'- gUGUaCGGuCUGGa-GGGGGUaa---GGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 31084 | 0.74 | 0.381139 |
Target: 5'- cCGCGUGCUGGGCCccaugCCgCCCGgcggCCCCg -3' miRNA: 3'- -GUGUACGGUCUGGa----GG-GGGUaa--GGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 33260 | 0.68 | 0.718399 |
Target: 5'- ----cGCCGG-CCgucgcggCCCCCGU-CCCCg -3' miRNA: 3'- guguaCGGUCuGGa------GGGGGUAaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 35330 | 0.68 | 0.698462 |
Target: 5'- ----gGCCGGGCCUCCCCgUGUgcaagCCCg -3' miRNA: 3'- guguaCGGUCUGGAGGGG-GUAa----GGGg -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 36016 | 0.68 | 0.738043 |
Target: 5'- cCGCG-GCCaAGGCuCUUCCCCg--CCCCu -3' miRNA: 3'- -GUGUaCGG-UCUG-GAGGGGGuaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 37726 | 0.73 | 0.459895 |
Target: 5'- gGCccGCCGGAgC-CCCCCGUcgCCCCc -3' miRNA: 3'- gUGuaCGGUCUgGaGGGGGUAa-GGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 38138 | 0.66 | 0.837596 |
Target: 5'- -cCGUGCagaAGaACUUCCCCgGgaCCCCg -3' miRNA: 3'- guGUACGg--UC-UGGAGGGGgUaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 38709 | 0.78 | 0.235068 |
Target: 5'- aGCcgGCCAGGCCcgcgCCCCCAgcgCCCg -3' miRNA: 3'- gUGuaCGGUCUGGa---GGGGGUaa-GGGg -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 42556 | 0.66 | 0.820853 |
Target: 5'- gCAgGUGCUcuuGcCCgagCCCgCGUUCCCCg -3' miRNA: 3'- -GUgUACGGu--CuGGa--GGGgGUAAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 48608 | 0.67 | 0.794481 |
Target: 5'- cCGCGUGCgCGGccgcgcCCagCCCCAcgCCCCg -3' miRNA: 3'- -GUGUACG-GUCu-----GGagGGGGUaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 52077 | 0.68 | 0.718399 |
Target: 5'- gGCG-GCCccuuuuuccCCUCCCCCcUUCCCCc -3' miRNA: 3'- gUGUaCGGucu------GGAGGGGGuAAGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 55551 | 0.67 | 0.794481 |
Target: 5'- ----aGCCAGGCC-CCgCCCAcgCCCa -3' miRNA: 3'- guguaCGGUCUGGaGG-GGGUaaGGGg -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 60856 | 0.67 | 0.794481 |
Target: 5'- uCGCGcGCCGGGCCgagCCCgcgCCGUguUCaCCCg -3' miRNA: 3'- -GUGUaCGGUCUGGa--GGG---GGUA--AG-GGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 61668 | 0.69 | 0.688406 |
Target: 5'- aGCG-GCCAGuCUuuUCCCCCg--CCCCg -3' miRNA: 3'- gUGUaCGGUCuGG--AGGGGGuaaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 61709 | 0.68 | 0.738043 |
Target: 5'- cCGCccGCCcGuguGCCcCCCCCAU-CCCCg -3' miRNA: 3'- -GUGuaCGGuC---UGGaGGGGGUAaGGGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 61951 | 0.66 | 0.845692 |
Target: 5'- gCGCGcGCC-GACCgcgUCCCCCAgccgggUCgCCg -3' miRNA: 3'- -GUGUaCGGuCUGG---AGGGGGUa-----AGgGG- -5' |
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23674 | 5' | -57.4 | NC_005261.1 | + | 65554 | 0.67 | 0.765855 |
Target: 5'- gCGCGUGCCAGGCgUCCaugaagugccgcaCCUggUCCgCg -3' miRNA: 3'- -GUGUACGGUCUGgAGG-------------GGGuaAGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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