miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23678 3' -52.6 NC_005261.1 + 89770 0.66 0.97667
Target:  5'- gCCGU--GGCCGAGgAGGcccugcGGGAGCgGa -3'
miRNA:   3'- -GGCAuaCCGGCUCgUCUu-----UCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 92225 0.69 0.91965
Target:  5'- gUCGUcgGccccGCCGAGCgcgcGGAuGGAGGCCa -3'
miRNA:   3'- -GGCAuaC----CGGCUCG----UCUuUCUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 94697 0.7 0.873214
Target:  5'- aCCGaggacGUGGCCGAGCu---GGAGcGCCGc -3'
miRNA:   3'- -GGCa----UACCGGCUCGucuuUCUU-CGGC- -5'
23678 3' -52.6 NC_005261.1 + 97569 0.66 0.979073
Target:  5'- cCCGggguuggcucgGUGGCgCGGGCGGAGcgggcGGAGCgGg -3'
miRNA:   3'- -GGCa----------UACCG-GCUCGUCUUu----CUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 98488 0.69 0.887682
Target:  5'- uCCGcg-GGCuCGGGCGGGuAAGguGCCGg -3'
miRNA:   3'- -GGCauaCCG-GCUCGUCU-UUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 100186 0.68 0.935847
Target:  5'- gCCGUGgcGGCgGGGCAGcguGGcGGCCa -3'
miRNA:   3'- -GGCAUa-CCGgCUCGUCuu-UCuUCGGc -5'
23678 3' -52.6 NC_005261.1 + 101676 0.68 0.940745
Target:  5'- cUCGUA-GGCCGAGCcGGc-GAAGCgGg -3'
miRNA:   3'- -GGCAUaCCGGCUCGuCUuuCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 103598 0.67 0.953958
Target:  5'- gCCGccGUGGCCGcggcGGCAGcgcGGGAGGCgGc -3'
miRNA:   3'- -GGCa-UACCGGC----UCGUCu--UUCUUCGgC- -5'
23678 3' -52.6 NC_005261.1 + 111558 0.66 0.968255
Target:  5'- aCCGccugcccGGCCGAcgcgGCAGAGcagcucGAGGCCGa -3'
miRNA:   3'- -GGCaua----CCGGCU----CGUCUUu-----CUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 114354 0.66 0.97667
Target:  5'- gCGcGUGGCCGcGGCcGAGucGGuGGCCGa -3'
miRNA:   3'- gGCaUACCGGC-UCGuCUU--UCuUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 115562 0.69 0.91375
Target:  5'- uCCGUGUGGCagcacaCGAacGCGGcGAGGAacuGGCCGu -3'
miRNA:   3'- -GGCAUACCG------GCU--CGUC-UUUCU---UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 117774 0.66 0.979073
Target:  5'- uCCGgaucgGGgCGGGgAGGAGGGAGgCGa -3'
miRNA:   3'- -GGCaua--CCgGCUCgUCUUUCUUCgGC- -5'
23678 3' -52.6 NC_005261.1 + 119976 0.7 0.85784
Target:  5'- uCCGUcgagccccGGCCGAcGCuGGAGGgcGCCGg -3'
miRNA:   3'- -GGCAua------CCGGCU-CGuCUUUCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121192 0.68 0.930699
Target:  5'- gCCGg--GGCCGGGCcc---GggGCCGc -3'
miRNA:   3'- -GGCauaCCGGCUCGucuuuCuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121434 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121497 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121557 0.67 0.949798
Target:  5'- gCCGUccucGGCgaaGGGCGGGGAcGAGGCCu -3'
miRNA:   3'- -GGCAua--CCGg--CUCGUCUUU-CUUCGGc -5'
23678 3' -52.6 NC_005261.1 + 121711 0.73 0.739901
Target:  5'- gCGUAgacGCCGAcgGCgGGGGAGAAGCCGa -3'
miRNA:   3'- gGCAUac-CGGCU--CG-UCUUUCUUCGGC- -5'
23678 3' -52.6 NC_005261.1 + 121791 0.75 0.605312
Target:  5'- gCCGgcgGGCUGGGCAGggGGcgcguGGCUGg -3'
miRNA:   3'- -GGCauaCCGGCUCGUCuuUCu----UCGGC- -5'
23678 3' -52.6 NC_005261.1 + 125367 0.69 0.894564
Target:  5'- ------cGCCGGGCAGAGGGgcGCUGg -3'
miRNA:   3'- ggcauacCGGCUCGUCUUUCuuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.