Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 137980 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 297 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 68228 | 0.73 | 0.636568 |
Target: 5'- cGGCGACcCUGACGGCGGGGGCGuguuCGu -3' miRNA: 3'- -UUGUUGaGGCUGCUGCUCCUGCu---GCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 34591 | 0.73 | 0.646932 |
Target: 5'- uGCGGCUUCGACGACGAcggccuGGcCGACGc -3' miRNA: 3'- uUGUUGAGGCUGCUGCU------CCuGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 1108 | 0.73 | 0.657283 |
Target: 5'- -----gUCCGAgGACGcGGACGACGAg -3' miRNA: 3'- uuguugAGGCUgCUGCuCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 134968 | 0.73 | 0.657283 |
Target: 5'- cGGCGACgcaGACGGCGAGGACGGgGc -3' miRNA: 3'- -UUGUUGaggCUGCUGCUCCUGCUgCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 29338 | 0.73 | 0.657283 |
Target: 5'- cGCGugcGCUUCGGCGGCGcGGGCGACa- -3' miRNA: 3'- uUGU---UGAGGCUGCUGCuCCUGCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 34791 | 0.73 | 0.667613 |
Target: 5'- gGAgGGCUCgGAgGAgGAGGAgGACGAg -3' miRNA: 3'- -UUgUUGAGgCUgCUgCUCCUgCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 1407 | 0.74 | 0.605489 |
Target: 5'- cGGCcGCggCGGCGGCGGGGGCGGCGc -3' miRNA: 3'- -UUGuUGagGCUGCUGCUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 96257 | 0.74 | 0.59516 |
Target: 5'- uGCAGCUCCcccuCGAguaCGAGGACGACGc -3' miRNA: 3'- uUGUUGAGGcu--GCU---GCUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 43594 | 0.75 | 0.54407 |
Target: 5'- cGCGACgCCGucucCGGCGAGGAgGGCGAg -3' miRNA: 3'- uUGUUGaGGCu---GCUGCUCCUgCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 138031 | 0.75 | 0.554191 |
Target: 5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3' miRNA: 3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 22919 | 0.75 | 0.564367 |
Target: 5'- --------gGACGACGAGGACGACGAu -3' miRNA: 3'- uuguugaggCUGCUGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 360 | 0.75 | 0.554191 |
Target: 5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3' miRNA: 3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 130471 | 0.76 | 0.504252 |
Target: 5'- gAGCGGCUCgcggcgugccuCGGCGGCGAGGGCcccGACGAc -3' miRNA: 3'- -UUGUUGAG-----------GCUGCUGCUCCUG---CUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 97943 | 0.76 | 0.504252 |
Target: 5'- -cCAGCUCCGGCGgcaACGAGGgaggugGCGGCGGa -3' miRNA: 3'- uuGUUGAGGCUGC---UGCUCC------UGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 55218 | 0.77 | 0.456359 |
Target: 5'- cGGCGGC-CCGagGCGGCGAGGGCGGCa- -3' miRNA: 3'- -UUGUUGaGGC--UGCUGCUCCUGCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88803 | 0.77 | 0.456359 |
Target: 5'- cGCAGCaggacgCCGGCGGCG-GGGCGGCGGc -3' miRNA: 3'- uUGUUGa-----GGCUGCUGCuCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 90122 | 0.77 | 0.447074 |
Target: 5'- cGCGGC-CCG-CGGCGAGGGCGAgGAg -3' miRNA: 3'- uUGUUGaGGCuGCUGCUCCUGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 52978 | 0.77 | 0.447074 |
Target: 5'- uGCGGCgCCGGCaGGCGGGGGCGGCGc -3' miRNA: 3'- uUGUUGaGGCUG-CUGCUCCUGCUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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