Results 121 - 128 of 128 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 10602 | 0.78 | 0.402293 |
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Target: 5'- cAGCGACUCCaGCaGCGAGGACGACu- -3' miRNA: 3'- -UUGUUGAGGcUGcUGCUCCUGCUGcu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 51986 | 0.78 | 0.393684 |
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Target: 5'- cGCGGCgccgccgCCGACuuCGAGGACGACGAc -3' miRNA: 3'- uUGUUGa------GGCUGcuGCUCCUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 77762 | 0.79 | 0.336864 |
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Target: 5'- cGCAGCcggGGCGGCGGGGACGACGAg -3' miRNA: 3'- uUGUUGaggCUGCUGCUCCUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 10853 | 0.81 | 0.266476 |
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Target: 5'- -cCAuCUCgGACGGCGAGGACGACGu -3' miRNA: 3'- uuGUuGAGgCUGCUGCUCCUGCUGCu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 10632 | 0.81 | 0.279539 |
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Target: 5'- gGACGACUacgaggaCGACuACGAGGACGACGAa -3' miRNA: 3'- -UUGUUGAg------GCUGcUGCUCCUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 134835 | 0.82 | 0.253912 |
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Target: 5'- -uCGGCUCCGACuGCGAGGAgGACGGg -3' miRNA: 3'- uuGUUGAGGCUGcUGCUCCUgCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 22946 | 0.88 | 0.103483 |
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Target: 5'- uGACGACga-GACGACGAGGACGACGAg -3' miRNA: 3'- -UUGUUGaggCUGCUGCUCCUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 22892 | 1.07 | 0.006322 |
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Target: 5'- aAACAACUCCGACGACGAGGACGACGAg -3' miRNA: 3'- -UUGUUGAGGCUGCUGCUCCUGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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