miRNA display CGI


Results 101 - 120 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 62410 0.66 0.959805
Target:  5'- gAGCAGCUCCGcgccCGcCGAGGccaGCG-CGAg -3'
miRNA:   3'- -UUGUUGAGGCu---GCuGCUCC---UGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 98815 0.66 0.959805
Target:  5'- cGGCGGCgugCCggaaGACGGgGGGGugGGCGu -3'
miRNA:   3'- -UUGUUGa--GG----CUGCUgCUCCugCUGCu -5'
23679 5' -53.8 NC_005261.1 + 22530 0.66 0.959805
Target:  5'- cAACAACg-CGACGGagggcCGGGGccGCGGCGAg -3'
miRNA:   3'- -UUGUUGagGCUGCU-----GCUCC--UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 30680 0.66 0.959805
Target:  5'- gGACGGggaCGGgGACGGGGACGGgGAg -3'
miRNA:   3'- -UUGUUgagGCUgCUGCUCCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 133807 0.66 0.959805
Target:  5'- gGGCuGCUCgaCGGCGACGAGGcgcugcGCGGCc- -3'
miRNA:   3'- -UUGuUGAG--GCUGCUGCUCC------UGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 385 0.66 0.963333
Target:  5'- uGGCGGCggCGGCGGCGGcGGCGGCa- -3'
miRNA:   3'- -UUGUUGagGCUGCUGCUcCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 47525 0.66 0.95605
Target:  5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3'
miRNA:   3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43083 0.66 0.95605
Target:  5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3'
miRNA:   3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 44423 0.66 0.947841
Target:  5'- cGCGuACgCCGACGACGuGGAgCGGCu- -3'
miRNA:   3'- uUGU-UGaGGCUGCUGCuCCU-GCUGcu -5'
23679 5' -53.8 NC_005261.1 + 82017 0.66 0.947841
Target:  5'- gAGCGGC-CCGuuGACGAGGuCGAaGAa -3'
miRNA:   3'- -UUGUUGaGGCugCUGCUCCuGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 87407 0.66 0.947841
Target:  5'- cGACGGCgCCGuCGACGGGcGcgcCGGCGAa -3'
miRNA:   3'- -UUGUUGaGGCuGCUGCUC-Cu--GCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 121715 0.66 0.947841
Target:  5'- --aGACgCCGACGGCGGGGGagaaGcCGAg -3'
miRNA:   3'- uugUUGaGGCUGCUGCUCCUg---CuGCU- -5'
23679 5' -53.8 NC_005261.1 + 71409 0.66 0.950821
Target:  5'- aGGCGGCgUCCGGCG-CGGGGcccggcccgggcccGCGGCGc -3'
miRNA:   3'- -UUGUUG-AGGCUGCuGCUCC--------------UGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 2834 0.66 0.952063
Target:  5'- --gAGCUCgGGCGGCaGGGcCGGCGGc -3'
miRNA:   3'- uugUUGAGgCUGCUGcUCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 86532 0.66 0.952063
Target:  5'- cGCAGCgcggguucCCGGCcACGuagGGGGCGGCGAu -3'
miRNA:   3'- uUGUUGa-------GGCUGcUGC---UCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 127793 0.66 0.952063
Target:  5'- gAGCGGCgggCCGGCGcCGcGG-CGGCGGg -3'
miRNA:   3'- -UUGUUGa--GGCUGCuGCuCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 133709 0.66 0.952063
Target:  5'- cGCGACcCCGGCGcCGucuacgucGGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUGCuGC--------UCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 88989 0.66 0.952063
Target:  5'- cGACAACUuucuccCCGGCGugaccaaguACGAGGGCGcCGu -3'
miRNA:   3'- -UUGUUGA------GGCUGC---------UGCUCCUGCuGCu -5'
23679 5' -53.8 NC_005261.1 + 60239 0.66 0.95605
Target:  5'- gGGCcgcCUCCGccGCGGCGGGaGCGGCGGc -3'
miRNA:   3'- -UUGuu-GAGGC--UGCUGCUCcUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43180 0.66 0.952063
Target:  5'- uACGGCgccgCCGGCGAggcaGAGGugGuGCGGc -3'
miRNA:   3'- uUGUUGa---GGCUGCUg---CUCCugC-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.