Results 121 - 128 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 127793 | 0.66 | 0.952063 |
|
Target: 5'- gAGCGGCgggCCGGCGcCGcGG-CGGCGGg -3' miRNA: 3'- -UUGUUGa--GGCUGCuGCuCCuGCUGCU- -5' |
|||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 133709 | 0.66 | 0.952063 |
|
Target: 5'- cGCGACcCCGGCGcCGucuacgucGGGGCGGCGc -3' miRNA: 3'- uUGUUGaGGCUGCuGC--------UCCUGCUGCu -5' |
|||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 88989 | 0.66 | 0.952063 |
|
Target: 5'- cGACAACUuucuccCCGGCGugaccaaguACGAGGGCGcCGu -3' miRNA: 3'- -UUGUUGA------GGCUGC---------UGCUCCUGCuGCu -5' |
|||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 60239 | 0.66 | 0.95605 |
|
Target: 5'- gGGCcgcCUCCGccGCGGCGGGaGCGGCGGc -3' miRNA: 3'- -UUGuu-GAGGC--UGCUGCUCcUGCUGCU- -5' |
|||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 43083 | 0.66 | 0.95605 |
|
Target: 5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3' miRNA: 3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5' |
|||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 47525 | 0.66 | 0.95605 |
|
Target: 5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3' miRNA: 3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5' |
|||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 60043 | 0.66 | 0.95605 |
|
Target: 5'- -uCGGCgCCGACGGCGGcGGcgaagaGCGGCGGc -3' miRNA: 3'- uuGUUGaGGCUGCUGCU-CC------UGCUGCU- -5' |
|||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 14123 | 0.65 | 0.96567 |
|
Target: 5'- -uCGGCUCgGGCGgugggcagucgcucGCGAGGACGcuccagccGCGAa -3' miRNA: 3'- uuGUUGAGgCUGC--------------UGCUCCUGC--------UGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home