Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 133709 | 0.66 | 0.952063 |
Target: 5'- cGCGACcCCGGCGcCGucuacgucGGGGCGGCGc -3' miRNA: 3'- uUGUUGaGGCUGCuGC--------UCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 127793 | 0.66 | 0.952063 |
Target: 5'- gAGCGGCgggCCGGCGcCGcGG-CGGCGGg -3' miRNA: 3'- -UUGUUGa--GGCUGCuGCuCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 86532 | 0.66 | 0.952063 |
Target: 5'- cGCAGCgcggguucCCGGCcACGuagGGGGCGGCGAu -3' miRNA: 3'- uUGUUGa-------GGCUGcUGC---UCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 43180 | 0.66 | 0.952063 |
Target: 5'- uACGGCgccgCCGGCGAggcaGAGGugGuGCGGc -3' miRNA: 3'- uUGUUGa---GGCUGCUg---CUCCugC-UGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 2834 | 0.66 | 0.952063 |
Target: 5'- --gAGCUCgGGCGGCaGGGcCGGCGGc -3' miRNA: 3'- uugUUGAGgCUGCUGcUCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 136510 | 0.66 | 0.95605 |
Target: 5'- cGACGccuGCUCCGGCGAacaGAGGuccAgGAUGGa -3' miRNA: 3'- -UUGU---UGAGGCUGCUg--CUCC---UgCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 97824 | 0.66 | 0.95605 |
Target: 5'- cGCAGa--CGGCGgcaaaaACGGGGGCGGCGGg -3' miRNA: 3'- uUGUUgagGCUGC------UGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 116620 | 0.66 | 0.95605 |
Target: 5'- cGCAccgcccGC-CCGcCGACGAGGGCGAgGc -3' miRNA: 3'- uUGU------UGaGGCuGCUGCUCCUGCUgCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 90425 | 0.66 | 0.95605 |
Target: 5'- cGCGACgUUCGACGugGGcGGGCGcGCGc -3' miRNA: 3'- uUGUUG-AGGCUGCugCU-CCUGC-UGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 72531 | 0.66 | 0.95605 |
Target: 5'- uGGCGGCUCgCugcGCGGCaGGGGACgGGCGAg -3' miRNA: 3'- -UUGUUGAG-Gc--UGCUG-CUCCUG-CUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 60043 | 0.66 | 0.95605 |
Target: 5'- -uCGGCgCCGACGGCGGcGGcgaagaGCGGCGGc -3' miRNA: 3'- uuGUUGaGGCUGCUGCU-CC------UGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 47525 | 0.66 | 0.95605 |
Target: 5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3' miRNA: 3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 43083 | 0.66 | 0.95605 |
Target: 5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3' miRNA: 3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 60239 | 0.66 | 0.95605 |
Target: 5'- gGGCcgcCUCCGccGCGGCGGGaGCGGCGGc -3' miRNA: 3'- -UUGuu-GAGGC--UGCUGCUCcUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 133807 | 0.66 | 0.959805 |
Target: 5'- gGGCuGCUCgaCGGCGACGAGGcgcugcGCGGCc- -3' miRNA: 3'- -UUGuUGAG--GCUGCUGCUCC------UGCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 30680 | 0.66 | 0.959805 |
Target: 5'- gGACGGggaCGGgGACGGGGACGGgGAg -3' miRNA: 3'- -UUGUUgagGCUgCUGCUCCUGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 22530 | 0.66 | 0.959805 |
Target: 5'- cAACAACg-CGACGGagggcCGGGGccGCGGCGAg -3' miRNA: 3'- -UUGUUGagGCUGCU-----GCUCC--UGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 98815 | 0.66 | 0.959805 |
Target: 5'- cGGCGGCgugCCggaaGACGGgGGGGugGGCGu -3' miRNA: 3'- -UUGUUGa--GG----CUGCUgCUCCugCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 62410 | 0.66 | 0.959805 |
Target: 5'- gAGCAGCUCCGcgccCGcCGAGGccaGCG-CGAg -3' miRNA: 3'- -UUGUUGAGGCu---GCuGCUCC---UGCuGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 22651 | 0.66 | 0.959805 |
Target: 5'- --aGACgcgCUGGCGGCGccuGGGCGGCGc -3' miRNA: 3'- uugUUGa--GGCUGCUGCu--CCUGCUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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