Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 67819 | 0.67 | 0.94338 |
Target: 5'- uGGCAACUCgGGCGcGCGcAGGAgGGCc- -3' miRNA: 3'- -UUGUUGAGgCUGC-UGC-UCCUgCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 68228 | 0.73 | 0.636568 |
Target: 5'- cGGCGACcCUGACGGCGGGGGCGuguuCGu -3' miRNA: 3'- -UUGUUGaGGCUGCUGCUCCUGCu---GCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 68603 | 0.68 | 0.898917 |
Target: 5'- gAGCGGggCCGACGGCGuGGGgGAgGAu -3' miRNA: 3'- -UUGUUgaGGCUGCUGCuCCUgCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 69334 | 0.67 | 0.93373 |
Target: 5'- cGGCGACagCGACGGaGAcGGCGACGAc -3' miRNA: 3'- -UUGUUGagGCUGCUgCUcCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 71409 | 0.66 | 0.950821 |
Target: 5'- aGGCGGCgUCCGGCG-CGGGGcccggcccgggcccGCGGCGc -3' miRNA: 3'- -UUGUUG-AGGCUGCuGCUCC--------------UGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 72531 | 0.66 | 0.95605 |
Target: 5'- uGGCGGCUCgCugcGCGGCaGGGGACgGGCGAg -3' miRNA: 3'- -UUGUUGAG-Gc--UGCUG-CUCCUG-CUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 75864 | 0.71 | 0.795833 |
Target: 5'- cGGCGGCcCCGACGGCGccGugGGCGc -3' miRNA: 3'- -UUGUUGaGGCUGCUGCucCugCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76448 | 0.7 | 0.839463 |
Target: 5'- gGACGcGC-CCGACGGCGAcGGCGGCGc -3' miRNA: 3'- -UUGU-UGaGGCUGCUGCUcCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76554 | 0.7 | 0.831092 |
Target: 5'- uACGGCaUgGGCGACGAGGGCGAg-- -3' miRNA: 3'- uUGUUGaGgCUGCUGCUCCUGCUgcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76732 | 0.67 | 0.923103 |
Target: 5'- cGCAGCUggCCGACGugcuCGcGGACGugGc -3' miRNA: 3'- uUGUUGA--GGCUGCu---GCuCCUGCugCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76869 | 0.69 | 0.855618 |
Target: 5'- uGGC-GC-CCGGCGAgGAGGcCGACGGc -3' miRNA: 3'- -UUGuUGaGGCUGCUgCUCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 77762 | 0.79 | 0.336864 |
Target: 5'- cGCAGCcggGGCGGCGGGGACGACGAg -3' miRNA: 3'- uUGUUGaggCUGCUGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 78414 | 0.69 | 0.870943 |
Target: 5'- ---uGCUCUGugGGCGAugggggGGGCGAUGGg -3' miRNA: 3'- uuguUGAGGCugCUGCU------CCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 81220 | 0.66 | 0.963333 |
Target: 5'- --gGACcaCCGugGcgccCGAGGGCGGCGGg -3' miRNA: 3'- uugUUGa-GGCugCu---GCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 82017 | 0.66 | 0.947841 |
Target: 5'- gAGCGGC-CCGuuGACGAGGuCGAaGAa -3' miRNA: 3'- -UUGUUGaGGCugCUGCUCCuGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 85547 | 0.67 | 0.923103 |
Target: 5'- gGGCGGCUCCGucuGCGgcgccGCGAGGuuCGGCGc -3' miRNA: 3'- -UUGUUGAGGC---UGC-----UGCUCCu-GCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 86532 | 0.66 | 0.952063 |
Target: 5'- cGCAGCgcggguucCCGGCcACGuagGGGGCGGCGAu -3' miRNA: 3'- uUGUUGa-------GGCUGcUGC---UCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 87407 | 0.66 | 0.947841 |
Target: 5'- cGACGGCgCCGuCGACGGGcGcgcCGGCGAa -3' miRNA: 3'- -UUGUUGaGGCuGCUGCUC-Cu--GCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88180 | 0.69 | 0.878279 |
Target: 5'- gGGCGACgCCGGCGGCGccGGCGagGCGGg -3' miRNA: 3'- -UUGUUGaGGCUGCUGCucCUGC--UGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88285 | 0.72 | 0.718641 |
Target: 5'- gGACGACgaCGGCGGCGccAGcGACGACGAa -3' miRNA: 3'- -UUGUUGagGCUGCUGC--UC-CUGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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