Results 81 - 100 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 88803 | 0.77 | 0.456359 |
Target: 5'- cGCAGCaggacgCCGGCGGCG-GGGCGGCGGc -3' miRNA: 3'- uUGUUGa-----GGCUGCUGCuCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88989 | 0.66 | 0.952063 |
Target: 5'- cGACAACUuucuccCCGGCGugaccaaguACGAGGGCGcCGu -3' miRNA: 3'- -UUGUUGA------GGCUGC---------UGCUCCUGCuGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 90063 | 0.66 | 0.963333 |
Target: 5'- cAGCGGCgccccgCgGGCGcCGAGGgcaGCGACGGg -3' miRNA: 3'- -UUGUUGa-----GgCUGCuGCUCC---UGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 90122 | 0.77 | 0.447074 |
Target: 5'- cGCGGC-CCG-CGGCGAGGGCGAgGAg -3' miRNA: 3'- uUGUUGaGGCuGCUGCUCCUGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 90425 | 0.66 | 0.95605 |
Target: 5'- cGCGACgUUCGACGugGGcGGGCGcGCGc -3' miRNA: 3'- uUGUUG-AGGCUGCugCU-CCUGC-UGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 94746 | 0.67 | 0.936727 |
Target: 5'- -cCGACgCCGACGuggagaucugguuCGAGGACGugGc -3' miRNA: 3'- uuGUUGaGGCUGCu------------GCUCCUGCugCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 95085 | 0.71 | 0.767767 |
Target: 5'- cGCGAC-CgCGACGGCGAGGcCGAUGc -3' miRNA: 3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 96257 | 0.74 | 0.59516 |
Target: 5'- uGCAGCUCCcccuCGAguaCGAGGACGACGc -3' miRNA: 3'- uUGUUGAGGcu--GCU---GCUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 97824 | 0.66 | 0.95605 |
Target: 5'- cGCAGa--CGGCGgcaaaaACGGGGGCGGCGGg -3' miRNA: 3'- uUGUUgagGCUGC------UGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 97943 | 0.76 | 0.504252 |
Target: 5'- -cCAGCUCCGGCGgcaACGAGGgaggugGCGGCGGa -3' miRNA: 3'- uuGUUGAGGCUGC---UGCUCC------UGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 98048 | 0.68 | 0.89227 |
Target: 5'- uGGCGGCcgCgGGCGGCGGgaccgcGGGCGGCGGg -3' miRNA: 3'- -UUGUUGa-GgCUGCUGCU------CCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 98386 | 0.67 | 0.928539 |
Target: 5'- cGCAAUaCCGGCGugG-GGGCGggcGCGGa -3' miRNA: 3'- uUGUUGaGGCUGCugCuCCUGC---UGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 98815 | 0.66 | 0.959805 |
Target: 5'- cGGCGGCgugCCggaaGACGGgGGGGugGGCGu -3' miRNA: 3'- -UUGUUGa--GG----CUGCUgCUCCugCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 99780 | 0.68 | 0.89227 |
Target: 5'- aGGCGGC-CCGggucccagucGCGGCGcGGAUGGCGAa -3' miRNA: 3'- -UUGUUGaGGC----------UGCUGCuCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 100180 | 0.67 | 0.93373 |
Target: 5'- cGCAACgCCGugGCGGCGGGGcaGCGugGc -3' miRNA: 3'- uUGUUGaGGC--UGCUGCUCC--UGCugCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 103860 | 0.67 | 0.938677 |
Target: 5'- gAGCcGCggCGGCGGCG-GGGCGGCGc -3' miRNA: 3'- -UUGuUGagGCUGCUGCuCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 105147 | 0.67 | 0.94338 |
Target: 5'- cGCAGgUCCucGCGGCucGAGGGCGGCGu -3' miRNA: 3'- uUGUUgAGGc-UGCUG--CUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 108452 | 0.66 | 0.963333 |
Target: 5'- gAGCAGCgcgUCGuCGGCGAGGAucuccgcguCGGCGc -3' miRNA: 3'- -UUGUUGa--GGCuGCUGCUCCU---------GCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 108863 | 0.69 | 0.870943 |
Target: 5'- aAGCGGCUCUGcaGCaGCGGguGGACGACGGc -3' miRNA: 3'- -UUGUUGAGGC--UGcUGCU--CCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 109107 | 0.71 | 0.786617 |
Target: 5'- --gGACgCCGGCcAUGAGGGCGGCGGu -3' miRNA: 3'- uugUUGaGGCUGcUGCUCCUGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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