miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 96257 0.74 0.59516
Target:  5'- uGCAGCUCCcccuCGAguaCGAGGACGACGc -3'
miRNA:   3'- uUGUUGAGGcu--GCU---GCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 95085 0.71 0.767767
Target:  5'- cGCGAC-CgCGACGGCGAGGcCGAUGc -3'
miRNA:   3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 94746 0.67 0.936727
Target:  5'- -cCGACgCCGACGuggagaucugguuCGAGGACGugGc -3'
miRNA:   3'- uuGUUGaGGCUGCu------------GCUCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 90425 0.66 0.95605
Target:  5'- cGCGACgUUCGACGugGGcGGGCGcGCGc -3'
miRNA:   3'- uUGUUG-AGGCUGCugCU-CCUGC-UGCu -5'
23679 5' -53.8 NC_005261.1 + 90122 0.77 0.447074
Target:  5'- cGCGGC-CCG-CGGCGAGGGCGAgGAg -3'
miRNA:   3'- uUGUUGaGGCuGCUGCUCCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 90063 0.66 0.963333
Target:  5'- cAGCGGCgccccgCgGGCGcCGAGGgcaGCGACGGg -3'
miRNA:   3'- -UUGUUGa-----GgCUGCuGCUCC---UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 88989 0.66 0.952063
Target:  5'- cGACAACUuucuccCCGGCGugaccaaguACGAGGGCGcCGu -3'
miRNA:   3'- -UUGUUGA------GGCUGC---------UGCUCCUGCuGCu -5'
23679 5' -53.8 NC_005261.1 + 88803 0.77 0.456359
Target:  5'- cGCAGCaggacgCCGGCGGCG-GGGCGGCGGc -3'
miRNA:   3'- uUGUUGa-----GGCUGCUGCuCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 88285 0.72 0.718641
Target:  5'- gGACGACgaCGGCGGCGccAGcGACGACGAa -3'
miRNA:   3'- -UUGUUGagGCUGCUGC--UC-CUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 88180 0.69 0.878279
Target:  5'- gGGCGACgCCGGCGGCGccGGCGagGCGGg -3'
miRNA:   3'- -UUGUUGaGGCUGCUGCucCUGC--UGCU- -5'
23679 5' -53.8 NC_005261.1 + 87407 0.66 0.947841
Target:  5'- cGACGGCgCCGuCGACGGGcGcgcCGGCGAa -3'
miRNA:   3'- -UUGUUGaGGCuGCUGCUC-Cu--GCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 86532 0.66 0.952063
Target:  5'- cGCAGCgcggguucCCGGCcACGuagGGGGCGGCGAu -3'
miRNA:   3'- uUGUUGa-------GGCUGcUGC---UCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 85547 0.67 0.923103
Target:  5'- gGGCGGCUCCGucuGCGgcgccGCGAGGuuCGGCGc -3'
miRNA:   3'- -UUGUUGAGGC---UGC-----UGCUCCu-GCUGCu -5'
23679 5' -53.8 NC_005261.1 + 82017 0.66 0.947841
Target:  5'- gAGCGGC-CCGuuGACGAGGuCGAaGAa -3'
miRNA:   3'- -UUGUUGaGGCugCUGCUCCuGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 81220 0.66 0.963333
Target:  5'- --gGACcaCCGugGcgccCGAGGGCGGCGGg -3'
miRNA:   3'- uugUUGa-GGCugCu---GCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 78414 0.69 0.870943
Target:  5'- ---uGCUCUGugGGCGAugggggGGGCGAUGGg -3'
miRNA:   3'- uuguUGAGGCugCUGCU------CCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 77762 0.79 0.336864
Target:  5'- cGCAGCcggGGCGGCGGGGACGACGAg -3'
miRNA:   3'- uUGUUGaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 76869 0.69 0.855618
Target:  5'- uGGC-GC-CCGGCGAgGAGGcCGACGGc -3'
miRNA:   3'- -UUGuUGaGGCUGCUgCUCCuGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 76732 0.67 0.923103
Target:  5'- cGCAGCUggCCGACGugcuCGcGGACGugGc -3'
miRNA:   3'- uUGUUGA--GGCUGCu---GCuCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 76554 0.7 0.831092
Target:  5'- uACGGCaUgGGCGACGAGGGCGAg-- -3'
miRNA:   3'- uUGUUGaGgCUGCUGCUCCUGCUgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.