miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 47877 0.67 0.93373
Target:  5'- cGGCAGCgUCCGgggaGCGGCGGcGGCGGCGc -3'
miRNA:   3'- -UUGUUG-AGGC----UGCUGCUcCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 47525 0.66 0.95605
Target:  5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3'
miRNA:   3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 44423 0.66 0.947841
Target:  5'- cGCGuACgCCGACGACGuGGAgCGGCu- -3'
miRNA:   3'- uUGU-UGaGGCUGCUGCuCCU-GCUGcu -5'
23679 5' -53.8 NC_005261.1 + 44014 0.66 0.963333
Target:  5'- -cCGGCUUCGGCG-CGGcGGGCGGCc- -3'
miRNA:   3'- uuGUUGAGGCUGCuGCU-CCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 43837 0.69 0.855618
Target:  5'- aAGCuGCUCggCGAgGGCGAGGACG-CGGc -3'
miRNA:   3'- -UUGuUGAG--GCUgCUGCUCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 43684 0.68 0.898917
Target:  5'- cAGCGGCUCC-ACGGCGAGGuccUGGCc- -3'
miRNA:   3'- -UUGUUGAGGcUGCUGCUCCu--GCUGcu -5'
23679 5' -53.8 NC_005261.1 + 43594 0.75 0.54407
Target:  5'- cGCGACgCCGucucCGGCGAGGAgGGCGAg -3'
miRNA:   3'- uUGUUGaGGCu---GCUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43180 0.66 0.952063
Target:  5'- uACGGCgccgCCGGCGAggcaGAGGugGuGCGGc -3'
miRNA:   3'- uUGUUGa---GGCUGCUg---CUCCugC-UGCU- -5'
23679 5' -53.8 NC_005261.1 + 43083 0.66 0.95605
Target:  5'- cACAACgcuaaacgCCGcGCGcuACGAGGACGugGc -3'
miRNA:   3'- uUGUUGa-------GGC-UGC--UGCUCCUGCugCu -5'
23679 5' -53.8 NC_005261.1 + 42172 0.7 0.839463
Target:  5'- aAGCGAg-CCGugGACGcAGGGCG-CGAg -3'
miRNA:   3'- -UUGUUgaGGCugCUGC-UCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 40665 0.7 0.839463
Target:  5'- cAGCAGCUCCG-CGACGccgucgGGGAgcCGGCGc -3'
miRNA:   3'- -UUGUUGAGGCuGCUGC------UCCU--GCUGCu -5'
23679 5' -53.8 NC_005261.1 + 34791 0.73 0.667613
Target:  5'- gGAgGGCUCgGAgGAgGAGGAgGACGAg -3'
miRNA:   3'- -UUgUUGAGgCUgCUgCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 34591 0.73 0.646932
Target:  5'- uGCGGCUUCGACGACGAcggccuGGcCGACGc -3'
miRNA:   3'- uUGUUGAGGCUGCUGCU------CCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 34308 0.69 0.855618
Target:  5'- gAGCGAgaCCGACGGgGAGGcCGAgGGg -3'
miRNA:   3'- -UUGUUgaGGCUGCUgCUCCuGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 32328 0.67 0.938677
Target:  5'- cGCGGCgcCCGGCGugGccuGGGACG-CGGa -3'
miRNA:   3'- uUGUUGa-GGCUGCugC---UCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 31440 0.7 0.813801
Target:  5'- uGGCGGCgCCGccCGGCGAGGACGAgCGc -3'
miRNA:   3'- -UUGUUGaGGCu-GCUGCUCCUGCU-GCu -5'
23679 5' -53.8 NC_005261.1 + 30833 0.66 0.963333
Target:  5'- gGACGGggCCGAgGAgGAGGAgGAgGAg -3'
miRNA:   3'- -UUGUUgaGGCUgCUgCUCCUgCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 30680 0.66 0.959805
Target:  5'- gGACGGggaCGGgGACGGGGACGGgGAg -3'
miRNA:   3'- -UUGUUgagGCUgCUGCUCCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 29338 0.73 0.657283
Target:  5'- cGCGugcGCUUCGGCGGCGcGGGCGACa- -3'
miRNA:   3'- uUGU---UGAGGCUGCUGCuCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 28654 0.69 0.863387
Target:  5'- uGACGAggCCGGCGGgGccGACGACGAc -3'
miRNA:   3'- -UUGUUgaGGCUGCUgCucCUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.