Results 121 - 128 of 128 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 2834 | 0.66 | 0.952063 |
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Target: 5'- --gAGCUCgGGCGGCaGGGcCGGCGGc -3' miRNA: 3'- uugUUGAGgCUGCUGcUCCuGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 2385 | 0.67 | 0.93373 |
|
Target: 5'- cAGCGGCgcgCUGGCGGCGAGcGCGcccGCGGg -3' miRNA: 3'- -UUGUUGa--GGCUGCUGCUCcUGC---UGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 1407 | 0.74 | 0.605489 |
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Target: 5'- cGGCcGCggCGGCGGCGGGGGCGGCGc -3' miRNA: 3'- -UUGuUGagGCUGCUGCUCCUGCUGCu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 1108 | 0.73 | 0.657283 |
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Target: 5'- -----gUCCGAgGACGcGGACGACGAg -3' miRNA: 3'- uuguugAGGCUgCUGCuCCUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 385 | 0.66 | 0.963333 |
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Target: 5'- uGGCGGCggCGGCGGCGGcGGCGGCa- -3' miRNA: 3'- -UUGUUGagGCUGCUGCUcCUGCUGcu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 360 | 0.75 | 0.554191 |
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Target: 5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3' miRNA: 3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 297 | 0.72 | 0.718641 |
|
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 261 | 0.72 | 0.718641 |
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Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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