miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 77762 0.79 0.336864
Target:  5'- cGCAGCcggGGCGGCGGGGACGACGAg -3'
miRNA:   3'- uUGUUGaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 10632 0.81 0.279539
Target:  5'- gGACGACUacgaggaCGACuACGAGGACGACGAa -3'
miRNA:   3'- -UUGUUGAg------GCUGcUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 10853 0.81 0.266476
Target:  5'- -cCAuCUCgGACGGCGAGGACGACGu -3'
miRNA:   3'- uuGUuGAGgCUGCUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 134835 0.82 0.253912
Target:  5'- -uCGGCUCCGACuGCGAGGAgGACGGg -3'
miRNA:   3'- uuGUUGAGGCUGcUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 22946 0.88 0.103483
Target:  5'- uGACGACga-GACGACGAGGACGACGAg -3'
miRNA:   3'- -UUGUUGaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43594 0.75 0.54407
Target:  5'- cGCGACgCCGucucCGGCGAGGAgGGCGAg -3'
miRNA:   3'- uUGUUGaGGCu---GCUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 360 0.75 0.554191
Target:  5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3'
miRNA:   3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 135027 0.72 0.698392
Target:  5'- cGCGGC-CgCGGCGGCGAGGcCGACGc -3'
miRNA:   3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 22694 0.72 0.698392
Target:  5'- gGACgGGC-CCGGCGACGAGGcCGuCGAg -3'
miRNA:   3'- -UUG-UUGaGGCUGCUGCUCCuGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 56165 0.72 0.698392
Target:  5'- cAGCGGCggggCCcGCGGgGAGGACGACGc -3'
miRNA:   3'- -UUGUUGa---GGcUGCUgCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 34791 0.73 0.667613
Target:  5'- gGAgGGCUCgGAgGAgGAGGAgGACGAg -3'
miRNA:   3'- -UUgUUGAGgCUgCUgCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 29338 0.73 0.657283
Target:  5'- cGCGugcGCUUCGGCGGCGcGGGCGACa- -3'
miRNA:   3'- uUGU---UGAGGCUGCUGCuCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 134968 0.73 0.657283
Target:  5'- cGGCGACgcaGACGGCGAGGACGGgGc -3'
miRNA:   3'- -UUGUUGaggCUGCUGCUCCUGCUgCu -5'
23679 5' -53.8 NC_005261.1 + 1108 0.73 0.657283
Target:  5'- -----gUCCGAgGACGcGGACGACGAg -3'
miRNA:   3'- uuguugAGGCUgCUGCuCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 34591 0.73 0.646932
Target:  5'- uGCGGCUUCGACGACGAcggccuGGcCGACGc -3'
miRNA:   3'- uUGUUGAGGCUGCUGCU------CCuGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 68228 0.73 0.636568
Target:  5'- cGGCGACcCUGACGGCGGGGGCGuguuCGu -3'
miRNA:   3'- -UUGUUGaGGCUGCUGCUCCUGCu---GCu -5'
23679 5' -53.8 NC_005261.1 + 1407 0.74 0.605489
Target:  5'- cGGCcGCggCGGCGGCGGGGGCGGCGc -3'
miRNA:   3'- -UUGuUGagGCUGCUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 96257 0.74 0.59516
Target:  5'- uGCAGCUCCcccuCGAguaCGAGGACGACGc -3'
miRNA:   3'- uUGUUGAGGcu--GCU---GCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 22919 0.75 0.564367
Target:  5'- --------gGACGACGAGGACGACGAu -3'
miRNA:   3'- uuguugaggCUGCUGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 138031 0.75 0.554191
Target:  5'- cGCGGC-CCGGCGGCGGuGGCGGCGGu -3'
miRNA:   3'- uUGUUGaGGCUGCUGCUcCUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.