Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 108863 | 0.69 | 0.870943 |
Target: 5'- aAGCGGCUCUGcaGCaGCGGguGGACGACGGc -3' miRNA: 3'- -UUGUUGAGGC--UGcUGCU--CCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 136613 | 0.69 | 0.870943 |
Target: 5'- gAGCGGCgCgCGcGCGcCGAGGGCGGCGGg -3' miRNA: 3'- -UUGUUGaG-GC-UGCuGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88180 | 0.69 | 0.878279 |
Target: 5'- gGGCGACgCCGGCGGCGccGGCGagGCGGg -3' miRNA: 3'- -UUGUUGaGGCUGCUGCucCUGC--UGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 3848 | 0.68 | 0.88539 |
Target: 5'- cGGCAGCggcgCCGGCGccGCGcGGcCGGCGAg -3' miRNA: 3'- -UUGUUGa---GGCUGC--UGCuCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 60313 | 0.68 | 0.89227 |
Target: 5'- -uCGGCUgaGACGAUcAGGugGACGAc -3' miRNA: 3'- uuGUUGAggCUGCUGcUCCugCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 40665 | 0.7 | 0.839463 |
Target: 5'- cAGCAGCUCCG-CGACGccgucgGGGAgcCGGCGc -3' miRNA: 3'- -UUGUUGAGGCuGCUGC------UCCU--GCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76554 | 0.7 | 0.831092 |
Target: 5'- uACGGCaUgGGCGACGAGGGCGAg-- -3' miRNA: 3'- uUGUUGaGgCUGCUGCUCCUGCUgcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88285 | 0.72 | 0.718641 |
Target: 5'- gGACGACgaCGGCGGCGccAGcGACGACGAa -3' miRNA: 3'- -UUGUUGagGCUGCUGC--UC-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 137944 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 137980 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 5998 | 0.71 | 0.758151 |
Target: 5'- cGCucCUCCcGCGGCGAGGGCuccGGCGAg -3' miRNA: 3'- uUGuuGAGGcUGCUGCUCCUG---CUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 117597 | 0.71 | 0.758151 |
Target: 5'- -uCGAUccugCCGACGAUGAcGACGACGAc -3' miRNA: 3'- uuGUUGa---GGCUGCUGCUcCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 95085 | 0.71 | 0.767767 |
Target: 5'- cGCGAC-CgCGACGGCGAGGcCGAUGc -3' miRNA: 3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 109107 | 0.71 | 0.786617 |
Target: 5'- --gGACgCCGGCcAUGAGGGCGGCGGu -3' miRNA: 3'- uugUUGaGGCUGcUGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 135124 | 0.71 | 0.786617 |
Target: 5'- cGCGuCUCCGcagcGCGGCGGGGGaGACGAc -3' miRNA: 3'- uUGUuGAGGC----UGCUGCUCCUgCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 5107 | 0.71 | 0.795833 |
Target: 5'- cACAGCUCCGccagcuCGGCGcGGGCGGCc- -3' miRNA: 3'- uUGUUGAGGCu-----GCUGCuCCUGCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 75864 | 0.71 | 0.795833 |
Target: 5'- cGGCGGCcCCGACGGCGccGugGGCGc -3' miRNA: 3'- -UUGUUGaGGCUGCUGCucCugCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 135059 | 0.7 | 0.804897 |
Target: 5'- cGGCAGCggcccgccgcuuUCCGGCGGCGGGcucgcggcccGGCGGCGGa -3' miRNA: 3'- -UUGUUG------------AGGCUGCUGCUC----------CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 31440 | 0.7 | 0.813801 |
Target: 5'- uGGCGGCgCCGccCGGCGAGGACGAgCGc -3' miRNA: 3'- -UUGUUGaGGCu-GCUGCUCCUGCU-GCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 5512 | 0.7 | 0.831092 |
Target: 5'- cGCGGCagCGGCGGCGAGGcCGcCGGc -3' miRNA: 3'- uUGUUGagGCUGCUGCUCCuGCuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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