Results 121 - 128 of 128 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23679 | 5' | -53.8 | NC_005261.1 | + | 75864 | 0.71 | 0.795833 |
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Target: 5'- cGGCGGCcCCGACGGCGccGugGGCGc -3' miRNA: 3'- -UUGUUGaGGCUGCUGCucCugCUGCu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 135059 | 0.7 | 0.804897 |
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Target: 5'- cGGCAGCggcccgccgcuuUCCGGCGGCGGGcucgcggcccGGCGGCGGa -3' miRNA: 3'- -UUGUUG------------AGGCUGCUGCUC----------CUGCUGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 31440 | 0.7 | 0.813801 |
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Target: 5'- uGGCGGCgCCGccCGGCGAGGACGAgCGc -3' miRNA: 3'- -UUGUUGaGGCu-GCUGCUCCUGCU-GCu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 5512 | 0.7 | 0.831092 |
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Target: 5'- cGCGGCagCGGCGGCGAGGcCGcCGGc -3' miRNA: 3'- uUGUUGagGCUGCUGCUCCuGCuGCU- -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 76554 | 0.7 | 0.831092 |
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Target: 5'- uACGGCaUgGGCGACGAGGGCGAg-- -3' miRNA: 3'- uUGUUGaGgCUGCUGCUCCUGCUgcu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 40665 | 0.7 | 0.839463 |
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Target: 5'- cAGCAGCUCCG-CGACGccgucgGGGAgcCGGCGc -3' miRNA: 3'- -UUGUUGAGGCuGCUGC------UCCU--GCUGCu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 76448 | 0.7 | 0.839463 |
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Target: 5'- gGACGcGC-CCGACGGCGAcGGCGGCGc -3' miRNA: 3'- -UUGU-UGaGGCUGCUGCUcCUGCUGCu -5' |
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| 23679 | 5' | -53.8 | NC_005261.1 | + | 16460 | 0.68 | 0.898917 |
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Target: 5'- -uCGACUCCucaaaguACGGCG-GGACGACGc -3' miRNA: 3'- uuGUUGAGGc------UGCUGCuCCUGCUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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