Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 1407 | 0.74 | 0.605489 |
Target: 5'- cGGCcGCggCGGCGGCGGGGGCGGCGc -3' miRNA: 3'- -UUGuUGagGCUGCUGCUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 68228 | 0.73 | 0.636568 |
Target: 5'- cGGCGACcCUGACGGCGGGGGCGuguuCGu -3' miRNA: 3'- -UUGUUGaGGCUGCUGCUCCUGCu---GCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88285 | 0.72 | 0.718641 |
Target: 5'- gGACGACgaCGGCGGCGccAGcGACGACGAa -3' miRNA: 3'- -UUGUUGagGCUGCUGC--UC-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 137944 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 137980 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 5998 | 0.71 | 0.758151 |
Target: 5'- cGCucCUCCcGCGGCGAGGGCuccGGCGAg -3' miRNA: 3'- uUGuuGAGGcUGCUGCUCCUG---CUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 117597 | 0.71 | 0.758151 |
Target: 5'- -uCGAUccugCCGACGAUGAcGACGACGAc -3' miRNA: 3'- uuGUUGa---GGCUGCUGCUcCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 95085 | 0.71 | 0.767767 |
Target: 5'- cGCGAC-CgCGACGGCGAGGcCGAUGc -3' miRNA: 3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 109107 | 0.71 | 0.786617 |
Target: 5'- --gGACgCCGGCcAUGAGGGCGGCGGu -3' miRNA: 3'- uugUUGaGGCUGcUGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 135124 | 0.71 | 0.786617 |
Target: 5'- cGCGuCUCCGcagcGCGGCGGGGGaGACGAc -3' miRNA: 3'- uUGUuGAGGC----UGCUGCUCCUgCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 297 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 261 | 0.72 | 0.718641 |
Target: 5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3' miRNA: 3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 34591 | 0.73 | 0.646932 |
Target: 5'- uGCGGCUUCGACGACGAcggccuGGcCGACGc -3' miRNA: 3'- uUGUUGAGGCUGCUGCU------CCuGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 1108 | 0.73 | 0.657283 |
Target: 5'- -----gUCCGAgGACGcGGACGACGAg -3' miRNA: 3'- uuguugAGGCUgCUGCuCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 134968 | 0.73 | 0.657283 |
Target: 5'- cGGCGACgcaGACGGCGAGGACGGgGc -3' miRNA: 3'- -UUGUUGaggCUGCUGCUCCUGCUgCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 29338 | 0.73 | 0.657283 |
Target: 5'- cGCGugcGCUUCGGCGGCGcGGGCGACa- -3' miRNA: 3'- uUGU---UGAGGCUGCUGCuCCUGCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 34791 | 0.73 | 0.667613 |
Target: 5'- gGAgGGCUCgGAgGAgGAGGAgGACGAg -3' miRNA: 3'- -UUgUUGAGgCUgCUgCUCCUgCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 56165 | 0.72 | 0.698392 |
Target: 5'- cAGCGGCggggCCcGCGGgGAGGACGACGc -3' miRNA: 3'- -UUGUUGa---GGcUGCUgCUCCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 22694 | 0.72 | 0.698392 |
Target: 5'- gGACgGGC-CCGGCGACGAGGcCGuCGAg -3' miRNA: 3'- -UUG-UUGaGGCUGCUGCUCCuGCuGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 135027 | 0.72 | 0.698392 |
Target: 5'- cGCGGC-CgCGGCGGCGAGGcCGACGc -3' miRNA: 3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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