Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2368 | 5' | -52.5 | NC_001416.1 | + | 4766 | 0.66 | 0.82297 |
Target: 5'- -cCAGCGAUCCGAugGuggaCGGCa- -3' miRNA: 3'- uaGUCGUUGGGCUugUuaugGCCGcu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 8750 | 0.66 | 0.813343 |
Target: 5'- -cCAGCucuucGCCCGuguauuCAGcGCCGGUGAg -3' miRNA: 3'- uaGUCGu----UGGGCuu----GUUaUGGCCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 14132 | 0.66 | 0.793486 |
Target: 5'- aAUCAGCGAUUCuGGCGcacgcCCGGCGAu -3' miRNA: 3'- -UAGUCGUUGGGcUUGUuau--GGCCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 4815 | 0.66 | 0.783279 |
Target: 5'- --uGGCAGCCUGuuGCAG-ACgGGCGAu -3' miRNA: 3'- uagUCGUUGGGCu-UGUUaUGgCCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 42718 | 0.66 | 0.783279 |
Target: 5'- cUCAGUgggAugCCGGACAuUACCGGaCa- -3' miRNA: 3'- uAGUCG---UugGGCUUGUuAUGGCC-Gcu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 4441 | 0.67 | 0.772903 |
Target: 5'- uGUC-GCAGCCCGGAUucaAAUGCUgcagccgcccaGGCGGg -3' miRNA: 3'- -UAGuCGUUGGGCUUG---UUAUGG-----------CCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 849 | 0.67 | 0.771857 |
Target: 5'- -aCGGCGgucuguggcuccgGCCUGAACAGUGagcgaagcCCGGCGc -3' miRNA: 3'- uaGUCGU-------------UGGGCUUGUUAU--------GGCCGCu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 20215 | 0.67 | 0.751694 |
Target: 5'- -gCGGCGGCCac--CAGUGCCGGUGc -3' miRNA: 3'- uaGUCGUUGGgcuuGUUAUGGCCGCu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 5785 | 0.68 | 0.718929 |
Target: 5'- -aCAGUGACCCGGcucauaccGCAAccgcgcCCGGCGGa -3' miRNA: 3'- uaGUCGUUGGGCU--------UGUUau----GGCCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 12759 | 0.68 | 0.718929 |
Target: 5'- -gCAGCGGCCUGAAUggcuGUACCGccugacGCGGa -3' miRNA: 3'- uaGUCGUUGGGCUUGu---UAUGGC------CGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 1977 | 0.68 | 0.707805 |
Target: 5'- -gUAGCggUCCagcuggGAGuCGAUACCGGCGGu -3' miRNA: 3'- uaGUCGuuGGG------CUU-GUUAUGGCCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 11682 | 0.68 | 0.696601 |
Target: 5'- -gCAGCAGCa-GAGCGAUACCGaaGCGu -3' miRNA: 3'- uaGUCGUUGggCUUGUUAUGGC--CGCu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 10300 | 0.68 | 0.695476 |
Target: 5'- uUCAGCGAUCCGGAUaugcauccgcugGAUuucagucugcugaACCGGCGc -3' miRNA: 3'- uAGUCGUUGGGCUUG------------UUA-------------UGGCCGCu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 16952 | 0.69 | 0.651235 |
Target: 5'- uAUCAGCA--CCGGugGcguGUGCUGGCGGu -3' miRNA: 3'- -UAGUCGUugGGCUugU---UAUGGCCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 17488 | 0.69 | 0.627248 |
Target: 5'- gGUCAGCAcgGCCCGGACGAcggaaaccacaUACCgcuucacgcaacuGGCGc -3' miRNA: 3'- -UAGUCGU--UGGGCUUGUU-----------AUGG-------------CCGCu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 17672 | 0.7 | 0.560271 |
Target: 5'- -gCGGCAAUCCgGAACGAUACCGaCGc -3' miRNA: 3'- uaGUCGUUGGG-CUUGUUAUGGCcGCu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 4950 | 0.71 | 0.537964 |
Target: 5'- gGUCAcGCAgaccGCCCGGACAGgcuccAUCGGCGu -3' miRNA: 3'- -UAGU-CGU----UGGGCUUGUUa----UGGCCGCu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 4734 | 0.72 | 0.473145 |
Target: 5'- -cCAGCGugCCGGACAccggcaGCaCGGCGAu -3' miRNA: 3'- uaGUCGUugGGCUUGUua----UG-GCCGCU- -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 16609 | 0.73 | 0.39337 |
Target: 5'- cGUCAGCGucuGCCCGuuCcAUACCGGCa- -3' miRNA: 3'- -UAGUCGU---UGGGCuuGuUAUGGCCGcu -5' |
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2368 | 5' | -52.5 | NC_001416.1 | + | 4530 | 0.85 | 0.066178 |
Target: 5'- gAUCAGCAGCCUGAcggauGCGGUGuCCGGCGAc -3' miRNA: 3'- -UAGUCGUUGGGCU-----UGUUAU-GGCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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