miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2368 5' -52.5 NC_001416.1 + 4766 0.66 0.82297
Target:  5'- -cCAGCGAUCCGAugGuggaCGGCa- -3'
miRNA:   3'- uaGUCGUUGGGCUugUuaugGCCGcu -5'
2368 5' -52.5 NC_001416.1 + 8750 0.66 0.813343
Target:  5'- -cCAGCucuucGCCCGuguauuCAGcGCCGGUGAg -3'
miRNA:   3'- uaGUCGu----UGGGCuu----GUUaUGGCCGCU- -5'
2368 5' -52.5 NC_001416.1 + 14132 0.66 0.793486
Target:  5'- aAUCAGCGAUUCuGGCGcacgcCCGGCGAu -3'
miRNA:   3'- -UAGUCGUUGGGcUUGUuau--GGCCGCU- -5'
2368 5' -52.5 NC_001416.1 + 4815 0.66 0.783279
Target:  5'- --uGGCAGCCUGuuGCAG-ACgGGCGAu -3'
miRNA:   3'- uagUCGUUGGGCu-UGUUaUGgCCGCU- -5'
2368 5' -52.5 NC_001416.1 + 42718 0.66 0.783279
Target:  5'- cUCAGUgggAugCCGGACAuUACCGGaCa- -3'
miRNA:   3'- uAGUCG---UugGGCUUGUuAUGGCC-Gcu -5'
2368 5' -52.5 NC_001416.1 + 4441 0.67 0.772903
Target:  5'- uGUC-GCAGCCCGGAUucaAAUGCUgcagccgcccaGGCGGg -3'
miRNA:   3'- -UAGuCGUUGGGCUUG---UUAUGG-----------CCGCU- -5'
2368 5' -52.5 NC_001416.1 + 849 0.67 0.771857
Target:  5'- -aCGGCGgucuguggcuccgGCCUGAACAGUGagcgaagcCCGGCGc -3'
miRNA:   3'- uaGUCGU-------------UGGGCUUGUUAU--------GGCCGCu -5'
2368 5' -52.5 NC_001416.1 + 20215 0.67 0.751694
Target:  5'- -gCGGCGGCCac--CAGUGCCGGUGc -3'
miRNA:   3'- uaGUCGUUGGgcuuGUUAUGGCCGCu -5'
2368 5' -52.5 NC_001416.1 + 12759 0.68 0.718929
Target:  5'- -gCAGCGGCCUGAAUggcuGUACCGccugacGCGGa -3'
miRNA:   3'- uaGUCGUUGGGCUUGu---UAUGGC------CGCU- -5'
2368 5' -52.5 NC_001416.1 + 5785 0.68 0.718929
Target:  5'- -aCAGUGACCCGGcucauaccGCAAccgcgcCCGGCGGa -3'
miRNA:   3'- uaGUCGUUGGGCU--------UGUUau----GGCCGCU- -5'
2368 5' -52.5 NC_001416.1 + 1977 0.68 0.707805
Target:  5'- -gUAGCggUCCagcuggGAGuCGAUACCGGCGGu -3'
miRNA:   3'- uaGUCGuuGGG------CUU-GUUAUGGCCGCU- -5'
2368 5' -52.5 NC_001416.1 + 11682 0.68 0.696601
Target:  5'- -gCAGCAGCa-GAGCGAUACCGaaGCGu -3'
miRNA:   3'- uaGUCGUUGggCUUGUUAUGGC--CGCu -5'
2368 5' -52.5 NC_001416.1 + 10300 0.68 0.695476
Target:  5'- uUCAGCGAUCCGGAUaugcauccgcugGAUuucagucugcugaACCGGCGc -3'
miRNA:   3'- uAGUCGUUGGGCUUG------------UUA-------------UGGCCGCu -5'
2368 5' -52.5 NC_001416.1 + 16952 0.69 0.651235
Target:  5'- uAUCAGCA--CCGGugGcguGUGCUGGCGGu -3'
miRNA:   3'- -UAGUCGUugGGCUugU---UAUGGCCGCU- -5'
2368 5' -52.5 NC_001416.1 + 17488 0.69 0.627248
Target:  5'- gGUCAGCAcgGCCCGGACGAcggaaaccacaUACCgcuucacgcaacuGGCGc -3'
miRNA:   3'- -UAGUCGU--UGGGCUUGUU-----------AUGG-------------CCGCu -5'
2368 5' -52.5 NC_001416.1 + 17672 0.7 0.560271
Target:  5'- -gCGGCAAUCCgGAACGAUACCGaCGc -3'
miRNA:   3'- uaGUCGUUGGG-CUUGUUAUGGCcGCu -5'
2368 5' -52.5 NC_001416.1 + 4950 0.71 0.537964
Target:  5'- gGUCAcGCAgaccGCCCGGACAGgcuccAUCGGCGu -3'
miRNA:   3'- -UAGU-CGU----UGGGCUUGUUa----UGGCCGCu -5'
2368 5' -52.5 NC_001416.1 + 4734 0.72 0.473145
Target:  5'- -cCAGCGugCCGGACAccggcaGCaCGGCGAu -3'
miRNA:   3'- uaGUCGUugGGCUUGUua----UG-GCCGCU- -5'
2368 5' -52.5 NC_001416.1 + 16609 0.73 0.39337
Target:  5'- cGUCAGCGucuGCCCGuuCcAUACCGGCa- -3'
miRNA:   3'- -UAGUCGU---UGGGCuuGuUAUGGCCGcu -5'
2368 5' -52.5 NC_001416.1 + 4530 0.85 0.066178
Target:  5'- gAUCAGCAGCCUGAcggauGCGGUGuCCGGCGAc -3'
miRNA:   3'- -UAGUCGUUGGGCU-----UGUUAU-GGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.