miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 27456 0.68 0.750756
Target:  5'- cGGCGGGCcgccccgcgGGGCGGGCAGgcccuccccgGGCGcACCu -3'
miRNA:   3'- cCUGCCUG---------CCUGCCUGUC----------UCGC-UGGc -5'
23680 5' -58.2 NC_005261.1 + 132899 0.69 0.663755
Target:  5'- cGGGCGccGCGGGCGGcGCcGAGCGGCgGc -3'
miRNA:   3'- -CCUGCc-UGCCUGCC-UGuCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 121436 0.69 0.673625
Target:  5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3'
miRNA:   3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 33600 0.69 0.67264
Target:  5'- gGGGCGGcgccggcGCGGGCGG-CGGGGC--CCGg -3'
miRNA:   3'- -CCUGCC-------UGCCUGCCuGUCUCGcuGGC- -5'
23680 5' -58.2 NC_005261.1 + 27334 0.69 0.673625
Target:  5'- gGGGCGGaACGGG-GGAaagggGGAGCGgcGCCGg -3'
miRNA:   3'- -CCUGCC-UGCCUgCCUg----UCUCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 121499 0.69 0.673625
Target:  5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3'
miRNA:   3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 20553 0.69 0.683464
Target:  5'- uGGACGuGGCGG-CGGGCuGcgcAGCGgcGCCGg -3'
miRNA:   3'- -CCUGC-CUGCCuGCCUGuC---UCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 127657 0.69 0.692284
Target:  5'- gGGGCGcGCGGguucgggGCgGGACGGcGGCGGCCGc -3'
miRNA:   3'- -CCUGCcUGCC-------UG-CCUGUC-UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 134943 0.69 0.703013
Target:  5'- aGGACGaGCcGAUGGGCgAGGGCG-CCGg -3'
miRNA:   3'- -CCUGCcUGcCUGCCUG-UCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 11097 0.69 0.703013
Target:  5'- gGGGCgGGACGcGACgGGACgAGAuGCG-CCGg -3'
miRNA:   3'- -CCUG-CCUGC-CUG-CCUG-UCU-CGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 98674 0.69 0.706898
Target:  5'- aGGGCGGGCuccgccggggccggaGGcGCGGcCGGAGCuggGGCCGg -3'
miRNA:   3'- -CCUGCCUG---------------CC-UGCCuGUCUCG---CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 15716 0.69 0.712707
Target:  5'- uGGGUGGACGGcgaACGcGACGGGGCcguccgcgcgcaGGCCGa -3'
miRNA:   3'- -CCUGCCUGCC---UGC-CUGUCUCG------------CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 44266 0.69 0.712707
Target:  5'- cGGCGcGCGGGgGGGCGGGGCccGCCGc -3'
miRNA:   3'- cCUGCcUGCCUgCCUGUCUCGc-UGGC- -5'
23680 5' -58.2 NC_005261.1 + 107257 0.7 0.614197
Target:  5'- -cGCGGGCGcGCGGGCAcGGGCGGgCGc -3'
miRNA:   3'- ccUGCCUGCcUGCCUGU-CUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 23772 0.7 0.623119
Target:  5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3'
miRNA:   3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 23829 0.7 0.623119
Target:  5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3'
miRNA:   3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 97701 0.7 0.634032
Target:  5'- gGGGCGGugGGGa-GACGGcgGGUGGCCc -3'
miRNA:   3'- -CCUGCCugCCUgcCUGUC--UCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 2801 0.7 0.634032
Target:  5'- cGGCGGcCGGGagGGGCcGGGCGGCCc -3'
miRNA:   3'- cCUGCCuGCCUg-CCUGuCUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 67086 0.7 0.642959
Target:  5'- cGGGCGGuccauggcgcgacGCGGuGCGGGCGGcgcgcgcagugcGGCGGCCc -3'
miRNA:   3'- -CCUGCC-------------UGCC-UGCCUGUC------------UCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 128101 0.7 0.653862
Target:  5'- cGGGCGaGCGGcGCGGcGCGGGGUcgGGCCGa -3'
miRNA:   3'- -CCUGCcUGCC-UGCC-UGUCUCG--CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.