miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 39358 0.7 0.611224
Target:  5'- cGGCGGcagccgccucaucgGCGGcCGGGgAGGGCGGCCc -3'
miRNA:   3'- cCUGCC--------------UGCCuGCCUgUCUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 44266 0.69 0.712707
Target:  5'- cGGCGcGCGGGgGGGCGGGGCccGCCGc -3'
miRNA:   3'- cCUGCcUGCCUgCCUGUCUCGc-UGGC- -5'
23680 5' -58.2 NC_005261.1 + 15716 0.69 0.712707
Target:  5'- uGGGUGGACGGcgaACGcGACGGGGCcguccgcgcgcaGGCCGa -3'
miRNA:   3'- -CCUGCCUGCC---UGC-CUGUCUCG------------CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 98674 0.69 0.706898
Target:  5'- aGGGCGGGCuccgccggggccggaGGcGCGGcCGGAGCuggGGCCGg -3'
miRNA:   3'- -CCUGCCUG---------------CC-UGCCuGUCUCG---CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 11097 0.69 0.703013
Target:  5'- gGGGCgGGACGcGACgGGACgAGAuGCG-CCGg -3'
miRNA:   3'- -CCUG-CCUGC-CUG-CCUG-UCU-CGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 134943 0.69 0.703013
Target:  5'- aGGACGaGCcGAUGGGCgAGGGCG-CCGg -3'
miRNA:   3'- -CCUGCcUGcCUGCCUG-UCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 127657 0.69 0.692284
Target:  5'- gGGGCGcGCGGguucgggGCgGGACGGcGGCGGCCGc -3'
miRNA:   3'- -CCUGCcUGCC-------UG-CCUGUC-UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 20553 0.69 0.683464
Target:  5'- uGGACGuGGCGG-CGGGCuGcgcAGCGgcGCCGg -3'
miRNA:   3'- -CCUGC-CUGCCuGCCUGuC---UCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 121499 0.69 0.673625
Target:  5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3'
miRNA:   3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 121436 0.69 0.673625
Target:  5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3'
miRNA:   3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 27334 0.69 0.673625
Target:  5'- gGGGCGGaACGGG-GGAaagggGGAGCGgcGCCGg -3'
miRNA:   3'- -CCUGCC-UGCCUgCCUg----UCUCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 33600 0.69 0.67264
Target:  5'- gGGGCGGcgccggcGCGGGCGG-CGGGGC--CCGg -3'
miRNA:   3'- -CCUGCC-------UGCCUGCCuGUCUCGcuGGC- -5'
23680 5' -58.2 NC_005261.1 + 132899 0.69 0.663755
Target:  5'- cGGGCGccGCGGGCGGcGCcGAGCGGCgGc -3'
miRNA:   3'- -CCUGCc-UGCCUGCC-UGuCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 138111 0.68 0.730942
Target:  5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3'
miRNA:   3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 440 0.68 0.730942
Target:  5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3'
miRNA:   3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 98102 0.68 0.726169
Target:  5'- gGGGCGcGGCGGGCGGcgagGCuGGggacgccgcggcaccGGCGGCCGu -3'
miRNA:   3'- -CCUGC-CUGCCUGCC----UG-UC---------------UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 84108 0.68 0.722337
Target:  5'- gGGGCgGGAUGGggaggggggcaGCGGGCGGGGUcGCUGg -3'
miRNA:   3'- -CCUG-CCUGCC-----------UGCCUGUCUCGcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 48183 0.68 0.722337
Target:  5'- uGGACGGGggaaGGGCaaACAGGGCGcggGCCGg -3'
miRNA:   3'- -CCUGCCUg---CCUGccUGUCUCGC---UGGC- -5'
23680 5' -58.2 NC_005261.1 + 38345 0.68 0.722337
Target:  5'- gGGGCGcGcACGcccaGCGGGCcuuuGGGGCGGCCGg -3'
miRNA:   3'- -CCUGC-C-UGCc---UGCCUG----UCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 15958 0.68 0.731894
Target:  5'- gGGGCGaguGGCGGGCgGGGgAGGGCccgGGCCGc -3'
miRNA:   3'- -CCUGC---CUGCCUG-CCUgUCUCG---CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.