Results 81 - 100 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 39783 | 0.68 | 0.760044 |
Target: 5'- aGGACGucgcCGGG-GGGCGGcGCGGCCGc -3' miRNA: 3'- -CCUGCcu--GCCUgCCUGUCuCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 80063 | 0.68 | 0.760044 |
Target: 5'- cGGCGGGCGcGGgGGGCGuGGGgGACgCGg -3' miRNA: 3'- cCUGCCUGC-CUgCCUGU-CUCgCUG-GC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 15481 | 0.68 | 0.760967 |
Target: 5'- cGGCGGACacgcgccgcucgcuGCGGGCGGGGCGugUGu -3' miRNA: 3'- cCUGCCUGcc------------UGCCUGUCUCGCugGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 4572 | 0.68 | 0.769226 |
Target: 5'- -cGCGGGCGGGucCGG-CGGGGCGcCCc -3' miRNA: 3'- ccUGCCUGCCU--GCCuGUCUCGCuGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 98195 | 0.68 | 0.769226 |
Target: 5'- ---gGGGCGcGGCGGGCAGcgGGCG-CCGc -3' miRNA: 3'- ccugCCUGC-CUGCCUGUC--UCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 98565 | 0.68 | 0.769226 |
Target: 5'- cGGCGGGCGGccguccuccGCGGGCucGGGCGAgUa -3' miRNA: 3'- cCUGCCUGCC---------UGCCUGu-CUCGCUgGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23627 | 0.68 | 0.74137 |
Target: 5'- gGGGCGcGGCGGG-GGuCGG-GCGGCUGg -3' miRNA: 3'- -CCUGC-CUGCCUgCCuGUCuCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 16181 | 0.68 | 0.74137 |
Target: 5'- cGGGCGuGGCGGG-GGugGGcGGgGGCCGc -3' miRNA: 3'- -CCUGC-CUGCCUgCCugUC-UCgCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 38345 | 0.68 | 0.722337 |
Target: 5'- gGGGCGcGcACGcccaGCGGGCcuuuGGGGCGGCCGg -3' miRNA: 3'- -CCUGC-C-UGCc---UGCCUG----UCUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 48183 | 0.68 | 0.722337 |
Target: 5'- uGGACGGGggaaGGGCaaACAGGGCGcggGCCGg -3' miRNA: 3'- -CCUGCCUg---CCUGccUGUCUCGC---UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 84108 | 0.68 | 0.722337 |
Target: 5'- gGGGCgGGAUGGggaggggggcaGCGGGCGGGGUcGCUGg -3' miRNA: 3'- -CCUG-CCUGCC-----------UGCCUGUCUCGcUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 98102 | 0.68 | 0.726169 |
Target: 5'- gGGGCGcGGCGGGCGGcgagGCuGGggacgccgcggcaccGGCGGCCGu -3' miRNA: 3'- -CCUGC-CUGCCUGCC----UG-UC---------------UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 440 | 0.68 | 0.730942 |
Target: 5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3' miRNA: 3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 138111 | 0.68 | 0.730942 |
Target: 5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3' miRNA: 3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 15958 | 0.68 | 0.731894 |
Target: 5'- gGGGCGaguGGCGGGCgGGGgAGGGCccgGGCCGc -3' miRNA: 3'- -CCUGC---CUGCCUG-CCUgUCUCG---CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 30445 | 0.68 | 0.731894 |
Target: 5'- aGGACGGGgaGGACgaGGACGGGGgGGaCGg -3' miRNA: 3'- -CCUGCCUg-CCUG--CCUGUCUCgCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 31458 | 0.68 | 0.731894 |
Target: 5'- aGGACGaGCGccGGCGGcCuGAGUGGCCGc -3' miRNA: 3'- -CCUGCcUGC--CUGCCuGuCUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 38939 | 0.68 | 0.731894 |
Target: 5'- cGGCGGcCGGGCGGGCc--GCGGCgCGc -3' miRNA: 3'- cCUGCCuGCCUGCCUGucuCGCUG-GC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 59790 | 0.68 | 0.731894 |
Target: 5'- cGACGGcgGCGGGCGG-CAGgccGGCGuggcGCCGc -3' miRNA: 3'- cCUGCC--UGCCUGCCuGUC---UCGC----UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 75181 | 0.68 | 0.731894 |
Target: 5'- cGACGGGCGcaugucGCGGACcuucauGGCGGCCGc -3' miRNA: 3'- cCUGCCUGCc-----UGCCUGuc----UCGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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