Results 41 - 60 of 154 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 105002 | 0.71 | 0.564945 |
Target: 5'- -cGCGGGCGG-CGGuCGGGGCG-CCa -3' miRNA: 3'- ccUGCCUGCCuGCCuGUCUCGCuGGc -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 74284 | 0.71 | 0.564945 |
Target: 5'- cGGCGGGCGGGgcggucgccgcCGGGCAGcAGacgcgaGACCGg -3' miRNA: 3'- cCUGCCUGCCU-----------GCCUGUC-UCg-----CUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 132639 | 0.71 | 0.594412 |
Target: 5'- aGGacGCGGGCGcGGCGGcCcuAGCGGCCGc -3' miRNA: 3'- -CC--UGCCUGC-CUGCCuGucUCGCUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 136572 | 0.71 | 0.594412 |
Target: 5'- aGGcGCGGGUGGGCGGgcGCAGAGaCGcCCGg -3' miRNA: 3'- -CC-UGCCUGCCUGCC--UGUCUC-GCuGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 134971 | 0.71 | 0.594412 |
Target: 5'- cGACGcaGACGGcgaGGACGGGGCcGCCGg -3' miRNA: 3'- cCUGC--CUGCCug-CCUGUCUCGcUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 138044 | 0.7 | 0.604295 |
Target: 5'- cGGugGcGGCGGugGcGGCGGcGGCGGCgGc -3' miRNA: 3'- -CCugC-CUGCCugC-CUGUC-UCGCUGgC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 90210 | 0.7 | 0.604295 |
Target: 5'- gGGGCGGcggagcgcccucGCGcGGCGGGCGG-GCGcGCCGu -3' miRNA: 3'- -CCUGCC------------UGC-CUGCCUGUCuCGC-UGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 17750 | 0.7 | 0.604295 |
Target: 5'- cGGGCGGACuucugGGGCGGugGuGGCGucACCa -3' miRNA: 3'- -CCUGCCUG-----CCUGCCugUcUCGC--UGGc -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 373 | 0.7 | 0.604295 |
Target: 5'- cGGugGcGGCGGugGcGGCGGcGGCGGCgGc -3' miRNA: 3'- -CCugC-CUGCCugC-CUGUC-UCGCUGgC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 32982 | 0.7 | 0.604295 |
Target: 5'- aGGAgGGaccGCGGA-GGAgGGGGCcGACCGg -3' miRNA: 3'- -CCUgCC---UGCCUgCCUgUCUCG-CUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 34209 | 0.7 | 0.604295 |
Target: 5'- aGACGGcgcguCGGACGcGgacGCAGAcGCGGCCGu -3' miRNA: 3'- cCUGCCu----GCCUGC-C---UGUCU-CGCUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 39358 | 0.7 | 0.611224 |
Target: 5'- cGGCGGcagccgccucaucgGCGGcCGGGgAGGGCGGCCc -3' miRNA: 3'- cCUGCC--------------UGCCuGCCUgUCUCGCUGGc -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 72552 | 0.7 | 0.613206 |
Target: 5'- gGGACGGGCGaGGaaaaaacgcCGGGCgccgagucccaagAGGGCGAUCGg -3' miRNA: 3'- -CCUGCCUGC-CU---------GCCUG-------------UCUCGCUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 107257 | 0.7 | 0.614197 |
Target: 5'- -cGCGGGCGcGCGGGCAcGGGCGGgCGc -3' miRNA: 3'- ccUGCCUGCcUGCCUGU-CUCGCUgGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 98472 | 0.7 | 0.614197 |
Target: 5'- cGACGGGCGGccguccuccGCGGGCucGGGCGgguaagguGCCGg -3' miRNA: 3'- cCUGCCUGCC---------UGCCUGu-CUCGC--------UGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 23772 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 23829 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 97701 | 0.7 | 0.634032 |
Target: 5'- gGGGCGGugGGGa-GACGGcgGGUGGCCc -3' miRNA: 3'- -CCUGCCugCCUgcCUGUC--UCGCUGGc -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 2801 | 0.7 | 0.634032 |
Target: 5'- cGGCGGcCGGGagGGGCcGGGCGGCCc -3' miRNA: 3'- cCUGCCuGCCUg-CCUGuCUCGCUGGc -5' |
|||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 67086 | 0.7 | 0.642959 |
Target: 5'- cGGGCGGuccauggcgcgacGCGGuGCGGGCGGcgcgcgcagugcGGCGGCCc -3' miRNA: 3'- -CCUGCC-------------UGCC-UGCCUGUC------------UCGCUGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home