miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 75181 0.68 0.731894
Target:  5'- cGACGGGCGcaugucGCGGACcuucauGGCGGCCGc -3'
miRNA:   3'- cCUGCCUGCc-----UGCCUGuc----UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 59790 0.68 0.731894
Target:  5'- cGACGGcgGCGGGCGG-CAGgccGGCGuggcGCCGc -3'
miRNA:   3'- cCUGCC--UGCCUGCCuGUC---UCGC----UGGC- -5'
23680 5' -58.2 NC_005261.1 + 38939 0.68 0.731894
Target:  5'- cGGCGGcCGGGCGGGCc--GCGGCgCGc -3'
miRNA:   3'- cCUGCCuGCCUGCCUGucuCGCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 31458 0.68 0.731894
Target:  5'- aGGACGaGCGccGGCGGcCuGAGUGGCCGc -3'
miRNA:   3'- -CCUGCcUGC--CUGCCuGuCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 30445 0.68 0.731894
Target:  5'- aGGACGGGgaGGACgaGGACGGGGgGGaCGg -3'
miRNA:   3'- -CCUGCCUg-CCUG--CCUGUCUCgCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 15958 0.68 0.731894
Target:  5'- gGGGCGaguGGCGGGCgGGGgAGGGCccgGGCCGc -3'
miRNA:   3'- -CCUGC---CUGCCUG-CCUgUCUCG---CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 111506 0.68 0.74137
Target:  5'- gGGGCGGACGaGcgaaauggcaaGCGaGACAGcgGGCGACgCGu -3'
miRNA:   3'- -CCUGCCUGC-C-----------UGC-CUGUC--UCGCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 23627 0.68 0.74137
Target:  5'- gGGGCGcGGCGGG-GGuCGG-GCGGCUGg -3'
miRNA:   3'- -CCUGC-CUGCCUgCCuGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 16181 0.68 0.74137
Target:  5'- cGGGCGuGGCGGG-GGugGGcGGgGGCCGc -3'
miRNA:   3'- -CCUGC-CUGCCUgCCugUC-UCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 73679 0.68 0.750756
Target:  5'- aGGGCGGgcGCGGGCuuaGACGGcuCGGCCa -3'
miRNA:   3'- -CCUGCC--UGCCUGc--CUGUCucGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 107605 0.68 0.750756
Target:  5'- ---aGGACGGcaGCGGGCAcAGCGuCCGu -3'
miRNA:   3'- ccugCCUGCC--UGCCUGUcUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 27456 0.68 0.750756
Target:  5'- cGGCGGGCcgccccgcgGGGCGGGCAGgcccuccccgGGCGcACCu -3'
miRNA:   3'- cCUGCCUG---------CCUGCCUGUC----------UCGC-UGGc -5'
23680 5' -58.2 NC_005261.1 + 34901 0.68 0.75912
Target:  5'- cGGAguCGGACgcggaggucgGGGCGcGGCcacgcggGGGGCGGCCGg -3'
miRNA:   3'- -CCU--GCCUG----------CCUGC-CUG-------UCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 80063 0.68 0.760044
Target:  5'- cGGCGGGCGcGGgGGGCGuGGGgGACgCGg -3'
miRNA:   3'- cCUGCCUGC-CUgCCUGU-CUCgCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 39783 0.68 0.760044
Target:  5'- aGGACGucgcCGGG-GGGCGGcGCGGCCGc -3'
miRNA:   3'- -CCUGCcu--GCCUgCCUGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 129740 0.68 0.760044
Target:  5'- aGGGCGG-CGGGgccCGGccuuCAGcaccGGCGACCGc -3'
miRNA:   3'- -CCUGCCuGCCU---GCCu---GUC----UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 79707 0.68 0.760044
Target:  5'- aGACcGGCGGGCGGcuguaGCAGAcGCcGCCGg -3'
miRNA:   3'- cCUGcCUGCCUGCC-----UGUCU-CGcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 15481 0.68 0.760967
Target:  5'- cGGCGGACacgcgccgcucgcuGCGGGCGGGGCGugUGu -3'
miRNA:   3'- cCUGCCUGcc------------UGCCUGUCUCGCugGC- -5'
23680 5' -58.2 NC_005261.1 + 98195 0.68 0.769226
Target:  5'- ---gGGGCGcGGCGGGCAGcgGGCG-CCGc -3'
miRNA:   3'- ccugCCUGC-CUGCCUGUC--UCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 98565 0.68 0.769226
Target:  5'- cGGCGGGCGGccguccuccGCGGGCucGGGCGAgUa -3'
miRNA:   3'- cCUGCCUGCC---------UGCCUGu-CUCGCUgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.