Results 121 - 140 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 74668 | 0.67 | 0.804724 |
Target: 5'- aGGcCGGggacGCGGACGcGACcgcgcgGGAGCuGGCCGc -3' miRNA: 3'- -CCuGCC----UGCCUGC-CUG------UCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 1006 | 0.67 | 0.813251 |
Target: 5'- gGGGCGGG-GGGCGG--GGGGCGGgUGg -3' miRNA: 3'- -CCUGCCUgCCUGCCugUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 27732 | 0.67 | 0.813251 |
Target: 5'- aGGAgCGGAgaCGcGCGGGCAGAGgaGCCGa -3' miRNA: 3'- -CCU-GCCU--GCcUGCCUGUCUCgcUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 50637 | 0.67 | 0.813251 |
Target: 5'- -cGCGGGCGG-CGGGguG-GCG-CCGg -3' miRNA: 3'- ccUGCCUGCCuGCCUguCuCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 68731 | 0.67 | 0.820793 |
Target: 5'- cGGCGGGCGccGGCGGGaagaagcgcccgcCGGGGCG-CCGc -3' miRNA: 3'- cCUGCCUGC--CUGCCU-------------GUCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23871 | 0.67 | 0.820793 |
Target: 5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3' miRNA: 3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 43779 | 0.67 | 0.821623 |
Target: 5'- gGGGCGGcgcGCGGA-GGGCgccgcgggugagGGGGCG-CCGg -3' miRNA: 3'- -CCUGCC---UGCCUgCCUG------------UCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 99755 | 0.67 | 0.821623 |
Target: 5'- -cACGGccagcacguCGGACGGGgAGAGgCGGCCc -3' miRNA: 3'- ccUGCCu--------GCCUGCCUgUCUC-GCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 129561 | 0.67 | 0.821623 |
Target: 5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3' miRNA: 3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 60050 | 0.67 | 0.821623 |
Target: 5'- cGACGG-CGG-CGGcgaAGAGCGgcgGCCGg -3' miRNA: 3'- cCUGCCuGCCuGCCug-UCUCGC---UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 76444 | 0.66 | 0.829834 |
Target: 5'- uGGCGGACGcgcccGACGGcgACGGcGGCG-CCGg -3' miRNA: 3'- cCUGCCUGC-----CUGCC--UGUC-UCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 100176 | 0.66 | 0.829834 |
Target: 5'- gGGACGcaacgccguGGCGG-CgGGGCAGcguGGCGGCCa -3' miRNA: 3'- -CCUGC---------CUGCCuG-CCUGUC---UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 94870 | 0.66 | 0.829834 |
Target: 5'- -cACGGccCGGGCGGGCGGcccGCGugCa -3' miRNA: 3'- ccUGCCu-GCCUGCCUGUCu--CGCugGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 109884 | 0.66 | 0.837875 |
Target: 5'- -cGCGGGCGGGCGcccCGGGGCuacagccccugGACCGc -3' miRNA: 3'- ccUGCCUGCCUGCcu-GUCUCG-----------CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 78484 | 0.66 | 0.837875 |
Target: 5'- gGGAauCGGGCGaaGCGGACAGAcGCGAg-- -3' miRNA: 3'- -CCU--GCCUGCc-UGCCUGUCU-CGCUggc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23984 | 0.66 | 0.837875 |
Target: 5'- cGGGCGGGCuaguCGcGGCGGAGCGcuGCUGc -3' miRNA: 3'- -CCUGCCUGccu-GC-CUGUCUCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 7991 | 0.66 | 0.837875 |
Target: 5'- cGGugGGAgaGGGgGGAgAGGGgGGCUu -3' miRNA: 3'- -CCugCCUg-CCUgCCUgUCUCgCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 128507 | 0.66 | 0.837875 |
Target: 5'- cGACGcGGCGG-CGGagGCAGccuccuGGCGGCUGg -3' miRNA: 3'- cCUGC-CUGCCuGCC--UGUC------UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 74710 | 0.66 | 0.837875 |
Target: 5'- -cGCGGgcGCGGAacCGGGCcgcGGcAGCGGCCGc -3' miRNA: 3'- ccUGCC--UGCCU--GCCUG---UC-UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 121775 | 0.66 | 0.844963 |
Target: 5'- cGGugGGguggccgcggccgGCGGGCuGGGCAGGgggcgcGUGGCUGg -3' miRNA: 3'- -CCugCC-------------UGCCUG-CCUGUCU------CGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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