Results 81 - 100 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 55186 | 0.68 | 0.721377 |
Target: 5'- gGGGCGGAuCGGcgcacggcguagcGCGGAUccGGCGGCCc -3' miRNA: 3'- -CCUGCCU-GCC-------------UGCCUGucUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 44266 | 0.69 | 0.712707 |
Target: 5'- cGGCGcGCGGGgGGGCGGGGCccGCCGc -3' miRNA: 3'- cCUGCcUGCCUgCCUGUCUCGc-UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 15716 | 0.69 | 0.712707 |
Target: 5'- uGGGUGGACGGcgaACGcGACGGGGCcguccgcgcgcaGGCCGa -3' miRNA: 3'- -CCUGCCUGCC---UGC-CUGUCUCG------------CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 98674 | 0.69 | 0.706898 |
Target: 5'- aGGGCGGGCuccgccggggccggaGGcGCGGcCGGAGCuggGGCCGg -3' miRNA: 3'- -CCUGCCUG---------------CC-UGCCuGUCUCG---CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 134943 | 0.69 | 0.703013 |
Target: 5'- aGGACGaGCcGAUGGGCgAGGGCG-CCGg -3' miRNA: 3'- -CCUGCcUGcCUGCCUG-UCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 11097 | 0.69 | 0.703013 |
Target: 5'- gGGGCgGGACGcGACgGGACgAGAuGCG-CCGg -3' miRNA: 3'- -CCUG-CCUGC-CUG-CCUG-UCU-CGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 127657 | 0.69 | 0.692284 |
Target: 5'- gGGGCGcGCGGguucgggGCgGGACGGcGGCGGCCGc -3' miRNA: 3'- -CCUGCcUGCC-------UG-CCUGUC-UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 20553 | 0.69 | 0.683464 |
Target: 5'- uGGACGuGGCGG-CGGGCuGcgcAGCGgcGCCGg -3' miRNA: 3'- -CCUGC-CUGCCuGCCUGuC---UCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 27334 | 0.69 | 0.673625 |
Target: 5'- gGGGCGGaACGGG-GGAaagggGGAGCGgcGCCGg -3' miRNA: 3'- -CCUGCC-UGCCUgCCUg----UCUCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 121436 | 0.69 | 0.673625 |
Target: 5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3' miRNA: 3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 121499 | 0.69 | 0.673625 |
Target: 5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3' miRNA: 3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 33600 | 0.69 | 0.67264 |
Target: 5'- gGGGCGGcgccggcGCGGGCGG-CGGGGC--CCGg -3' miRNA: 3'- -CCUGCC-------UGCCUGCCuGUCUCGcuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 132899 | 0.69 | 0.663755 |
Target: 5'- cGGGCGccGCGGGCGGcGCcGAGCGGCgGc -3' miRNA: 3'- -CCUGCc-UGCCUGCC-UGuCUCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 128101 | 0.7 | 0.653862 |
Target: 5'- cGGGCGaGCGGcGCGGcGCGGGGUcgGGCCGa -3' miRNA: 3'- -CCUGCcUGCC-UGCC-UGUCUCG--CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 67086 | 0.7 | 0.642959 |
Target: 5'- cGGGCGGuccauggcgcgacGCGGuGCGGGCGGcgcgcgcagugcGGCGGCCc -3' miRNA: 3'- -CCUGCC-------------UGCC-UGCCUGUC------------UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 2801 | 0.7 | 0.634032 |
Target: 5'- cGGCGGcCGGGagGGGCcGGGCGGCCc -3' miRNA: 3'- cCUGCCuGCCUg-CCUGuCUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 97701 | 0.7 | 0.634032 |
Target: 5'- gGGGCGGugGGGa-GACGGcgGGUGGCCc -3' miRNA: 3'- -CCUGCCugCCUgcCUGUC--UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23829 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23772 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 107257 | 0.7 | 0.614197 |
Target: 5'- -cGCGGGCGcGCGGGCAcGGGCGGgCGc -3' miRNA: 3'- ccUGCCUGCcUGCCUGU-CUCGCUgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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