miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 73679 0.68 0.750756
Target:  5'- aGGGCGGgcGCGGGCuuaGACGGcuCGGCCa -3'
miRNA:   3'- -CCUGCC--UGCCUGc--CUGUCucGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 74284 0.71 0.564945
Target:  5'- cGGCGGGCGGGgcggucgccgcCGGGCAGcAGacgcgaGACCGg -3'
miRNA:   3'- cCUGCCUGCCU-----------GCCUGUC-UCg-----CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 74348 0.75 0.345639
Target:  5'- aGGCGcGGCGG-CGGAaGGGGCGGCCGc -3'
miRNA:   3'- cCUGC-CUGCCuGCCUgUCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 74414 0.67 0.804724
Target:  5'- cGGccGCGGGCGGGaGGGCcgaggAGAGCGcCCc -3'
miRNA:   3'- -CC--UGCCUGCCUgCCUG-----UCUCGCuGGc -5'
23680 5' -58.2 NC_005261.1 + 74668 0.67 0.804724
Target:  5'- aGGcCGGggacGCGGACGcGACcgcgcgGGAGCuGGCCGc -3'
miRNA:   3'- -CCuGCC----UGCCUGC-CUG------UCUCG-CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 74710 0.66 0.837875
Target:  5'- -cGCGGgcGCGGAacCGGGCcgcGGcAGCGGCCGc -3'
miRNA:   3'- ccUGCC--UGCCU--GCCUG---UC-UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 74864 0.75 0.345639
Target:  5'- cGGGCGGAgGaGGCGGACGcGGCGGCgGc -3'
miRNA:   3'- -CCUGCCUgC-CUGCCUGUcUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 75181 0.68 0.731894
Target:  5'- cGACGGGCGcaugucGCGGACcuucauGGCGGCCGc -3'
miRNA:   3'- cCUGCCUGCc-----UGCCUGuc----UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 75477 0.67 0.79605
Target:  5'- cGGGCGG-CGGcGCGGGCcgcuacgagcgcGGGGCG-CUGg -3'
miRNA:   3'- -CCUGCCuGCC-UGCCUG------------UCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 76444 0.66 0.829834
Target:  5'- uGGCGGACGcgcccGACGGcgACGGcGGCG-CCGg -3'
miRNA:   3'- cCUGCCUGC-----CUGCC--UGUC-UCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 77223 0.67 0.79605
Target:  5'- uGGcCGGGgGGGaGGAgcCAGAGCGcaGCCGg -3'
miRNA:   3'- -CCuGCCUgCCUgCCU--GUCUCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 77680 0.67 0.787237
Target:  5'- gGGcGCGGACGGGcCGGGCuacGA-CGGCCc -3'
miRNA:   3'- -CC-UGCCUGCCU-GCCUGu--CUcGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 78484 0.66 0.837875
Target:  5'- gGGAauCGGGCGaaGCGGACAGAcGCGAg-- -3'
miRNA:   3'- -CCU--GCCUGCc-UGCCUGUCU-CGCUggc -5'
23680 5' -58.2 NC_005261.1 + 79707 0.68 0.760044
Target:  5'- aGACcGGCGGGCGGcuguaGCAGAcGCcGCCGg -3'
miRNA:   3'- cCUGcCUGCCUGCC-----UGUCU-CGcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 80063 0.68 0.760044
Target:  5'- cGGCGGGCGcGGgGGGCGuGGGgGACgCGg -3'
miRNA:   3'- cCUGCCUGC-CUgCCUGU-CUCgCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 84108 0.68 0.722337
Target:  5'- gGGGCgGGAUGGggaggggggcaGCGGGCGGGGUcGCUGg -3'
miRNA:   3'- -CCUG-CCUGCC-----------UGCCUGUCUCGcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 85936 0.66 0.86092
Target:  5'- --cUGGAUGG-CGGcCAGGGCG-CCGc -3'
miRNA:   3'- ccuGCCUGCCuGCCuGUCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 87823 0.66 0.845741
Target:  5'- gGGACGG--GGACGGggaACgAGAGCGAaaGa -3'
miRNA:   3'- -CCUGCCugCCUGCC---UG-UCUCGCUggC- -5'
23680 5' -58.2 NC_005261.1 + 87889 0.74 0.426143
Target:  5'- aGGcGCGGAgaGGGCGGGCcGGGCGuACCGu -3'
miRNA:   3'- -CC-UGCCUg-CCUGCCUGuCUCGC-UGGC- -5'
23680 5' -58.2 NC_005261.1 + 89270 0.67 0.79605
Target:  5'- cGGGC-GACGGGCuGGCGuucccGGCGGCCGc -3'
miRNA:   3'- -CCUGcCUGCCUGcCUGUc----UCGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.