miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 90210 0.7 0.604295
Target:  5'- gGGGCGGcggagcgcccucGCGcGGCGGGCGG-GCGcGCCGu -3'
miRNA:   3'- -CCUGCC------------UGC-CUGCCUGUCuCGC-UGGC- -5'
23680 5' -58.2 NC_005261.1 + 93676 0.71 0.555203
Target:  5'- cGGGCGG-CGGcGCcGGCGGGGCG-CCGg -3'
miRNA:   3'- -CCUGCCuGCC-UGcCUGUCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 94870 0.66 0.829834
Target:  5'- -cACGGccCGGGCGGGCGGcccGCGugCa -3'
miRNA:   3'- ccUGCCu-GCCUGCCUGUCu--CGCugGc -5'
23680 5' -58.2 NC_005261.1 + 97054 0.66 0.853425
Target:  5'- aGGGCGGGgGGcgGCGGGCAcGAuccGCGucggaggcGCCGg -3'
miRNA:   3'- -CCUGCCUgCC--UGCCUGU-CU---CGC--------UGGC- -5'
23680 5' -58.2 NC_005261.1 + 97594 0.86 0.07859
Target:  5'- cGGAgCGGGCGGAgCGGGCGGAGCGGgCGg -3'
miRNA:   3'- -CCU-GCCUGCCU-GCCUGUCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 97621 0.84 0.106962
Target:  5'- nGGAgCGGGCGGAgCGGGCGGAGCGGgCGc -3'
miRNA:   3'- -CCU-GCCUGCCU-GCCUGUCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 97701 0.7 0.634032
Target:  5'- gGGGCGGugGGGa-GACGGcgGGUGGCCc -3'
miRNA:   3'- -CCUGCCugCCUgcCUGUC--UCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 97749 0.76 0.316637
Target:  5'- gGGGCgGGGCGGGCucGGCGGcGCGGCCGg -3'
miRNA:   3'- -CCUG-CCUGCCUGc-CUGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 97844 0.76 0.30899
Target:  5'- gGGGCGG-CGGGCGccgccgcGGCAGcGCGGCCGg -3'
miRNA:   3'- -CCUGCCuGCCUGC-------CUGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 97959 0.67 0.79605
Target:  5'- cGAgGGA-GGugGcGGCGGAGCGGugcCCGg -3'
miRNA:   3'- cCUgCCUgCCugC-CUGUCUCGCU---GGC- -5'
23680 5' -58.2 NC_005261.1 + 98042 0.67 0.787237
Target:  5'- cGGuACuGGCGGccGCGGGCGGcGgGACCGc -3'
miRNA:   3'- -CC-UGcCUGCC--UGCCUGUCuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 98102 0.68 0.726169
Target:  5'- gGGGCGcGGCGGGCGGcgagGCuGGggacgccgcggcaccGGCGGCCGu -3'
miRNA:   3'- -CCUGC-CUGCCUGCC----UG-UC---------------UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 98195 0.68 0.769226
Target:  5'- ---gGGGCGcGGCGGGCAGcgGGCG-CCGc -3'
miRNA:   3'- ccugCCUGC-CUGCCUGUC--UCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 98472 0.7 0.614197
Target:  5'- cGACGGGCGGccguccuccGCGGGCucGGGCGgguaagguGCCGg -3'
miRNA:   3'- cCUGCCUGCC---------UGCCUGu-CUCGC--------UGGC- -5'
23680 5' -58.2 NC_005261.1 + 98565 0.68 0.769226
Target:  5'- cGGCGGGCGGccguccuccGCGGGCucGGGCGAgUa -3'
miRNA:   3'- cCUGCCUGCC---------UGCCUGu-CUCGCUgGc -5'
23680 5' -58.2 NC_005261.1 + 98674 0.69 0.706898
Target:  5'- aGGGCGGGCuccgccggggccggaGGcGCGGcCGGAGCuggGGCCGg -3'
miRNA:   3'- -CCUGCCUG---------------CC-UGCCuGUCUCG---CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 99755 0.67 0.821623
Target:  5'- -cACGGccagcacguCGGACGGGgAGAGgCGGCCc -3'
miRNA:   3'- ccUGCCu--------GCCUGCCUgUCUC-GCUGGc -5'
23680 5' -58.2 NC_005261.1 + 100176 0.66 0.829834
Target:  5'- gGGACGcaacgccguGGCGG-CgGGGCAGcguGGCGGCCa -3'
miRNA:   3'- -CCUGC---------CUGCCuG-CCUGUC---UCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 104087 0.72 0.526297
Target:  5'- cGGCGGACaGGGCGG-CGGcgcuccgcGCGACCGc -3'
miRNA:   3'- cCUGCCUG-CCUGCCuGUCu-------CGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 105002 0.71 0.564945
Target:  5'- -cGCGGGCGG-CGGuCGGGGCG-CCa -3'
miRNA:   3'- ccUGCCUGCCuGCCuGUCUCGCuGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.