miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 107257 0.7 0.614197
Target:  5'- -cGCGGGCGcGCGGGCAcGGGCGGgCGc -3'
miRNA:   3'- ccUGCCUGCcUGCCUGU-CUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 107605 0.68 0.750756
Target:  5'- ---aGGACGGcaGCGGGCAcAGCGuCCGu -3'
miRNA:   3'- ccugCCUGCC--UGCCUGUcUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 109884 0.66 0.837875
Target:  5'- -cGCGGGCGGGCGcccCGGGGCuacagccccugGACCGc -3'
miRNA:   3'- ccUGCCUGCCUGCcu-GUCUCG-----------CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 110819 0.73 0.443537
Target:  5'- gGGGCGGACGGggccGCGGAC-GAGUuuCCGc -3'
miRNA:   3'- -CCUGCCUGCC----UGCCUGuCUCGcuGGC- -5'
23680 5' -58.2 NC_005261.1 + 111410 0.78 0.246478
Target:  5'- cGGACGGGCGGgccacacgccgGCGGGCaAGAGacggaCGACCGg -3'
miRNA:   3'- -CCUGCCUGCC-----------UGCCUG-UCUC-----GCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 111506 0.68 0.74137
Target:  5'- gGGGCGGACGaGcgaaauggcaaGCGaGACAGcgGGCGACgCGu -3'
miRNA:   3'- -CCUGCCUGC-C-----------UGC-CUGUC--UCGCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 113906 0.72 0.526297
Target:  5'- cGGGCGcGAUGGccgaggcaGCGGGCGcGGCGACCc -3'
miRNA:   3'- -CCUGC-CUGCC--------UGCCUGUcUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 116489 0.73 0.470355
Target:  5'- gGGGCGGGCGcGCGGuauaaAGAGCGccGCCGc -3'
miRNA:   3'- -CCUGCCUGCcUGCCug---UCUCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 121436 0.69 0.673625
Target:  5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3'
miRNA:   3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 121499 0.69 0.673625
Target:  5'- gGGGCGG-CgGGGCGGGCAu-GgGGCCGu -3'
miRNA:   3'- -CCUGCCuG-CCUGCCUGUcuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 121775 0.66 0.844963
Target:  5'- cGGugGGguggccgcggccgGCGGGCuGGGCAGGgggcgcGUGGCUGg -3'
miRNA:   3'- -CCugCC-------------UGCCUG-CCUGUCU------CGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 123167 0.77 0.289507
Target:  5'- gGGGCGGGCGcGCGGGCGuGGUGGCUGg -3'
miRNA:   3'- -CCUGCCUGCcUGCCUGUcUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 126956 0.66 0.853425
Target:  5'- cGGGCGcGgGGGCGG-CAGcGCGAaCCGn -3'
miRNA:   3'- -CCUGCcUgCCUGCCuGUCuCGCU-GGC- -5'
23680 5' -58.2 NC_005261.1 + 126983 0.67 0.79605
Target:  5'- -cGCGGG-GGACGGACcgucaGGGGcCGACCc -3'
miRNA:   3'- ccUGCCUgCCUGCCUG-----UCUC-GCUGGc -5'
23680 5' -58.2 NC_005261.1 + 127313 0.71 0.562017
Target:  5'- uGGCGGugGGGCccugccgcccgcggGGGcCGGAGCGGCgGg -3'
miRNA:   3'- cCUGCCugCCUG--------------CCU-GUCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 127625 0.71 0.545511
Target:  5'- cGGcCGGcCGGACGcGACGGcGGCGgcGCCGg -3'
miRNA:   3'- -CCuGCCuGCCUGC-CUGUC-UCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 127657 0.69 0.692284
Target:  5'- gGGGCGcGCGGguucgggGCgGGACGGcGGCGGCCGc -3'
miRNA:   3'- -CCUGCcUGCC-------UG-CCUGUC-UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 127815 0.67 0.803863
Target:  5'- cGGCGGgccgcucgcgcucGCGGccgcgagcaGCGGACGGGGCGGUCGc -3'
miRNA:   3'- cCUGCC-------------UGCC---------UGCCUGUCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 128070 0.85 0.08714
Target:  5'- uGGCGGGCGGGCGGGC-GAGCGAgCGg -3'
miRNA:   3'- cCUGCCUGCCUGCCUGuCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 128101 0.7 0.653862
Target:  5'- cGGGCGaGCGGcGCGGcGCGGGGUcgGGCCGa -3'
miRNA:   3'- -CCUGCcUGCC-UGCC-UGUCUCG--CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.