miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 68694 0.66 0.853425
Target:  5'- gGGGcCGGcGCGGAC-GACGGcGGCG-CCGg -3'
miRNA:   3'- -CCU-GCC-UGCCUGcCUGUC-UCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 67086 0.7 0.642959
Target:  5'- cGGGCGGuccauggcgcgacGCGGuGCGGGCGGcgcgcgcagugcGGCGGCCc -3'
miRNA:   3'- -CCUGCC-------------UGCC-UGCCUGUC------------UCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 64113 0.67 0.787237
Target:  5'- cGGcACGGGCGGcACGuGCcGcGCGGCCGc -3'
miRNA:   3'- -CC-UGCCUGCC-UGCcUGuCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 60050 0.67 0.821623
Target:  5'- cGACGG-CGG-CGGcgaAGAGCGgcgGCCGg -3'
miRNA:   3'- cCUGCCuGCCuGCCug-UCUCGC---UGGC- -5'
23680 5' -58.2 NC_005261.1 + 59790 0.68 0.731894
Target:  5'- cGACGGcgGCGGGCGG-CAGgccGGCGuggcGCCGc -3'
miRNA:   3'- cCUGCC--UGCCUGCCuGUC---UCGC----UGGC- -5'
23680 5' -58.2 NC_005261.1 + 59724 0.66 0.853425
Target:  5'- cGcCGGGCGGcaGCGG-CGGcgcGCGGCCGc -3'
miRNA:   3'- cCuGCCUGCC--UGCCuGUCu--CGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 58300 0.67 0.804724
Target:  5'- cGGgGGGCGcGgGGAgGGGGCGGCCc -3'
miRNA:   3'- cCUgCCUGCcUgCCUgUCUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 56135 0.71 0.555203
Target:  5'- aGGGCGGGgGGcGCGGGCcgAGGGUGGCgGc -3'
miRNA:   3'- -CCUGCCUgCC-UGCCUG--UCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 55186 0.68 0.721377
Target:  5'- gGGGCGGAuCGGcgcacggcguagcGCGGAUccGGCGGCCc -3'
miRNA:   3'- -CCUGCCU-GCC-------------UGCCUGucUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 50637 0.67 0.813251
Target:  5'- -cGCGGGCGG-CGGGguG-GCG-CCGg -3'
miRNA:   3'- ccUGCCUGCCuGCCUguCuCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 48183 0.68 0.722337
Target:  5'- uGGACGGGggaaGGGCaaACAGGGCGcggGCCGg -3'
miRNA:   3'- -CCUGCCUg---CCUGccUGUCUCGC---UGGC- -5'
23680 5' -58.2 NC_005261.1 + 44266 0.69 0.712707
Target:  5'- cGGCGcGCGGGgGGGCGGGGCccGCCGc -3'
miRNA:   3'- cCUGCcUGCCUgCCUGUCUCGc-UGGC- -5'
23680 5' -58.2 NC_005261.1 + 44021 0.73 0.479477
Target:  5'- cGGCGcGGCGGGCGGccgccGCGcGGCGGCCGc -3'
miRNA:   3'- cCUGC-CUGCCUGCC-----UGUcUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 43779 0.67 0.821623
Target:  5'- gGGGCGGcgcGCGGA-GGGCgccgcgggugagGGGGCG-CCGg -3'
miRNA:   3'- -CCUGCC---UGCCUgCCUG------------UCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 40170 0.66 0.853425
Target:  5'- aGugGGGCaGGGCccACAGGGgGGCCa -3'
miRNA:   3'- cCugCCUG-CCUGccUGUCUCgCUGGc -5'
23680 5' -58.2 NC_005261.1 + 39783 0.68 0.760044
Target:  5'- aGGACGucgcCGGG-GGGCGGcGCGGCCGc -3'
miRNA:   3'- -CCUGCcu--GCCUgCCUGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 39358 0.7 0.611224
Target:  5'- cGGCGGcagccgccucaucgGCGGcCGGGgAGGGCGGCCc -3'
miRNA:   3'- cCUGCC--------------UGCCuGCCUgUCUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 38939 0.68 0.731894
Target:  5'- cGGCGGcCGGGCGGGCc--GCGGCgCGc -3'
miRNA:   3'- cCUGCCuGCCUGCCUGucuCGCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 38345 0.68 0.722337
Target:  5'- gGGGCGcGcACGcccaGCGGGCcuuuGGGGCGGCCGg -3'
miRNA:   3'- -CCUGC-C-UGCc---UGCCUG----UCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 38277 0.67 0.790779
Target:  5'- gGGGCGGcuggugcacGCGGugcuggcccgccugaGCGcGCAGGGCGGCCc -3'
miRNA:   3'- -CCUGCC---------UGCC---------------UGCcUGUCUCGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.