miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 35272 0.73 0.451493
Target:  5'- uGGugGuGACGGGCGGugAgggaggacgagaaGAGCG-CCGg -3'
miRNA:   3'- -CCugC-CUGCCUGCCugU-------------CUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 34901 0.68 0.75912
Target:  5'- cGGAguCGGACgcggaggucgGGGCGcGGCcacgcggGGGGCGGCCGg -3'
miRNA:   3'- -CCU--GCCUG----------CCUGC-CUG-------UCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 34209 0.7 0.604295
Target:  5'- aGACGGcgcguCGGACGcGgacGCAGAcGCGGCCGu -3'
miRNA:   3'- cCUGCCu----GCCUGC-C---UGUCU-CGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 33801 0.77 0.296114
Target:  5'- -cGCGGGCGG-CGGGCuugucuuuGGGCGGCCGg -3'
miRNA:   3'- ccUGCCUGCCuGCCUGu-------CUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 33600 0.69 0.67264
Target:  5'- gGGGCGGcgccggcGCGGGCGG-CGGGGC--CCGg -3'
miRNA:   3'- -CCUGCC-------UGCCUGCCuGUCUCGcuGGC- -5'
23680 5' -58.2 NC_005261.1 + 32982 0.7 0.604295
Target:  5'- aGGAgGGaccGCGGA-GGAgGGGGCcGACCGg -3'
miRNA:   3'- -CCUgCC---UGCCUgCCUgUCUCG-CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 32925 0.72 0.526297
Target:  5'- gGGGCGG-CGGGCGGGgGGGG-GGCgGg -3'
miRNA:   3'- -CCUGCCuGCCUGCCUgUCUCgCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 32384 0.66 0.86092
Target:  5'- aGGCGcGGCGcGGCGGcguccCGGAGCGcguGCCGc -3'
miRNA:   3'- cCUGC-CUGC-CUGCCu----GUCUCGC---UGGC- -5'
23680 5' -58.2 NC_005261.1 + 32099 0.66 0.86092
Target:  5'- cGGACuucGCGGA-GGGCGaGGCGGCCa -3'
miRNA:   3'- -CCUGcc-UGCCUgCCUGUcUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 31574 0.74 0.426143
Target:  5'- uGGACGGGCGcGcCGGACGuGAGCGcGCuCGg -3'
miRNA:   3'- -CCUGCCUGC-CuGCCUGU-CUCGC-UG-GC- -5'
23680 5' -58.2 NC_005261.1 + 31458 0.68 0.731894
Target:  5'- aGGACGaGCGccGGCGGcCuGAGUGGCCGc -3'
miRNA:   3'- -CCUGCcUGC--CUGCCuGuCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 30679 0.67 0.79605
Target:  5'- gGGACGGggACGGGgacggGGACGGGGaGGCCc -3'
miRNA:   3'- -CCUGCC--UGCCUg----CCUGUCUCgCUGGc -5'
23680 5' -58.2 NC_005261.1 + 30445 0.68 0.731894
Target:  5'- aGGACGGGgaGGACgaGGACGGGGgGGaCGg -3'
miRNA:   3'- -CCUGCCUg-CCUG--CCUGUCUCgCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 27732 0.67 0.813251
Target:  5'- aGGAgCGGAgaCGcGCGGGCAGAGgaGCCGa -3'
miRNA:   3'- -CCU-GCCU--GCcUGCCUGUCUCgcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 27456 0.68 0.750756
Target:  5'- cGGCGGGCcgccccgcgGGGCGGGCAGgcccuccccgGGCGcACCu -3'
miRNA:   3'- cCUGCCUG---------CCUGCCUGUC----------UCGC-UGGc -5'
23680 5' -58.2 NC_005261.1 + 27334 0.69 0.673625
Target:  5'- gGGGCGGaACGGG-GGAaagggGGAGCGgcGCCGg -3'
miRNA:   3'- -CCUGCC-UGCCUgCCUg----UCUCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 27252 0.78 0.240782
Target:  5'- gGGugGGGCGGgguguGCGGGCAGccCGGCCGg -3'
miRNA:   3'- -CCugCCUGCC-----UGCCUGUCucGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 26875 0.71 0.555203
Target:  5'- gGGGCGGG-GGugGGugGGGGgGGgCGg -3'
miRNA:   3'- -CCUGCCUgCCugCCugUCUCgCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 23984 0.66 0.837875
Target:  5'- cGGGCGGGCuaguCGcGGCGGAGCGcuGCUGc -3'
miRNA:   3'- -CCUGCCUGccu-GC-CUGUCUCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 23871 0.67 0.820793
Target:  5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3'
miRNA:   3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.