Results 81 - 100 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 132639 | 0.71 | 0.594412 |
Target: 5'- aGGacGCGGGCGcGGCGGcCcuAGCGGCCGc -3' miRNA: 3'- -CC--UGCCUGC-CUGCCuGucUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 136572 | 0.71 | 0.594412 |
Target: 5'- aGGcGCGGGUGGGCGGgcGCAGAGaCGcCCGg -3' miRNA: 3'- -CC-UGCCUGCCUGCC--UGUCUC-GCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 134971 | 0.71 | 0.594412 |
Target: 5'- cGACGcaGACGGcgaGGACGGGGCcGCCGg -3' miRNA: 3'- cCUGC--CUGCCug-CCUGUCUCGcUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 34209 | 0.7 | 0.604295 |
Target: 5'- aGACGGcgcguCGGACGcGgacGCAGAcGCGGCCGu -3' miRNA: 3'- cCUGCCu----GCCUGC-C---UGUCU-CGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 32982 | 0.7 | 0.604295 |
Target: 5'- aGGAgGGaccGCGGA-GGAgGGGGCcGACCGg -3' miRNA: 3'- -CCUgCC---UGCCUgCCUgUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 373 | 0.7 | 0.604295 |
Target: 5'- cGGugGcGGCGGugGcGGCGGcGGCGGCgGc -3' miRNA: 3'- -CCugC-CUGCCugC-CUGUC-UCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 17750 | 0.7 | 0.604295 |
Target: 5'- cGGGCGGACuucugGGGCGGugGuGGCGucACCa -3' miRNA: 3'- -CCUGCCUG-----CCUGCCugUcUCGC--UGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 93676 | 0.71 | 0.555203 |
Target: 5'- cGGGCGG-CGGcGCcGGCGGGGCG-CCGg -3' miRNA: 3'- -CCUGCCuGCC-UGcCUGUCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 56135 | 0.71 | 0.555203 |
Target: 5'- aGGGCGGGgGGcGCGGGCcgAGGGUGGCgGc -3' miRNA: 3'- -CCUGCCUgCC-UGCCUG--UCUCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 26875 | 0.71 | 0.555203 |
Target: 5'- gGGGCGGG-GGugGGugGGGGgGGgCGg -3' miRNA: 3'- -CCUGCCUgCCugCCugUCUCgCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 71058 | 0.73 | 0.461322 |
Target: 5'- cGugGGccagccgccGCGcGGCGGGCGGGGCGuCCGg -3' miRNA: 3'- cCugCC---------UGC-CUGCCUGUCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 116489 | 0.73 | 0.470355 |
Target: 5'- gGGGCGGGCGcGCGGuauaaAGAGCGccGCCGc -3' miRNA: 3'- -CCUGCCUGCcUGCCug---UCUCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 44021 | 0.73 | 0.479477 |
Target: 5'- cGGCGcGGCGGGCGGccgccGCGcGGCGGCCGc -3' miRNA: 3'- cCUGC-CUGCCUGCC-----UGUcUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23546 | 0.72 | 0.497975 |
Target: 5'- aGGCGGcaggagccgucGCaGGugGGGCAGGGCuGGCCGu -3' miRNA: 3'- cCUGCC-----------UG-CCugCCUGUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 22100 | 0.72 | 0.526297 |
Target: 5'- gGGGCGGgaggGCGGuguGCGGAgAGuGCGugCGg -3' miRNA: 3'- -CCUGCC----UGCC---UGCCUgUCuCGCugGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 32925 | 0.72 | 0.526297 |
Target: 5'- gGGGCGG-CGGGCGGGgGGGG-GGCgGg -3' miRNA: 3'- -CCUGCCuGCCUGCCUgUCUCgCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 113906 | 0.72 | 0.526297 |
Target: 5'- cGGGCGcGAUGGccgaggcaGCGGGCGcGGCGACCc -3' miRNA: 3'- -CCUGC-CUGCC--------UGCCUGUcUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 104087 | 0.72 | 0.526297 |
Target: 5'- cGGCGGACaGGGCGG-CGGcgcuccgcGCGACCGc -3' miRNA: 3'- cCUGCCUG-CCUGCCuGUCu-------CGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 13092 | 0.72 | 0.535874 |
Target: 5'- cGGCGGGCGG-CGGGCucGGcucgggggcgucGGCGGCCGc -3' miRNA: 3'- cCUGCCUGCCuGCCUG--UC------------UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 127625 | 0.71 | 0.545511 |
Target: 5'- cGGcCGGcCGGACGcGACGGcGGCGgcGCCGg -3' miRNA: 3'- -CCuGCCuGCCUGC-CUGUC-UCGC--UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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