miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 107257 0.7 0.614197
Target:  5'- -cGCGGGCGcGCGGGCAcGGGCGGgCGc -3'
miRNA:   3'- ccUGCCUGCcUGCCUGU-CUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 23772 0.7 0.623119
Target:  5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3'
miRNA:   3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 23829 0.7 0.623119
Target:  5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3'
miRNA:   3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 97701 0.7 0.634032
Target:  5'- gGGGCGGugGGGa-GACGGcgGGUGGCCc -3'
miRNA:   3'- -CCUGCCugCCUgcCUGUC--UCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 2801 0.7 0.634032
Target:  5'- cGGCGGcCGGGagGGGCcGGGCGGCCc -3'
miRNA:   3'- cCUGCCuGCCUg-CCUGuCUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 34209 0.7 0.604295
Target:  5'- aGACGGcgcguCGGACGcGgacGCAGAcGCGGCCGu -3'
miRNA:   3'- cCUGCCu----GCCUGC-C---UGUCU-CGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 134971 0.71 0.594412
Target:  5'- cGACGcaGACGGcgaGGACGGGGCcGCCGg -3'
miRNA:   3'- cCUGC--CUGCCug-CCUGUCUCGcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 32925 0.72 0.526297
Target:  5'- gGGGCGG-CGGGCGGGgGGGG-GGCgGg -3'
miRNA:   3'- -CCUGCCuGCCUGCCUgUCUCgCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 113906 0.72 0.526297
Target:  5'- cGGGCGcGAUGGccgaggcaGCGGGCGcGGCGACCc -3'
miRNA:   3'- -CCUGC-CUGCC--------UGCCUGUcUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 104087 0.72 0.526297
Target:  5'- cGGCGGACaGGGCGG-CGGcgcuccgcGCGACCGc -3'
miRNA:   3'- cCUGCCUG-CCUGCCuGUCu-------CGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 13092 0.72 0.535874
Target:  5'- cGGCGGGCGG-CGGGCucGGcucgggggcgucGGCGGCCGc -3'
miRNA:   3'- cCUGCCUGCCuGCCUG--UC------------UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 127625 0.71 0.545511
Target:  5'- cGGcCGGcCGGACGcGACGGcGGCGgcGCCGg -3'
miRNA:   3'- -CCuGCCuGCCUGC-CUGUC-UCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 26875 0.71 0.555203
Target:  5'- gGGGCGGG-GGugGGugGGGGgGGgCGg -3'
miRNA:   3'- -CCUGCCUgCCugCCugUCUCgCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 56135 0.71 0.555203
Target:  5'- aGGGCGGGgGGcGCGGGCcgAGGGUGGCgGc -3'
miRNA:   3'- -CCUGCCUgCC-UGCCUG--UCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 93676 0.71 0.555203
Target:  5'- cGGGCGG-CGGcGCcGGCGGGGCG-CCGg -3'
miRNA:   3'- -CCUGCCuGCC-UGcCUGUCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 127313 0.71 0.562017
Target:  5'- uGGCGGugGGGCccugccgcccgcggGGGcCGGAGCGGCgGg -3'
miRNA:   3'- cCUGCCugCCUG--------------CCU-GUCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 74284 0.71 0.564945
Target:  5'- cGGCGGGCGGGgcggucgccgcCGGGCAGcAGacgcgaGACCGg -3'
miRNA:   3'- cCUGCCUGCCU-----------GCCUGUC-UCg-----CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 105002 0.71 0.564945
Target:  5'- -cGCGGGCGG-CGGuCGGGGCG-CCa -3'
miRNA:   3'- ccUGCCUGCCuGCCuGUCUCGCuGGc -5'
23680 5' -58.2 NC_005261.1 + 132639 0.71 0.594412
Target:  5'- aGGacGCGGGCGcGGCGGcCcuAGCGGCCGc -3'
miRNA:   3'- -CC--UGCCUGC-CUGCCuGucUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 136572 0.71 0.594412
Target:  5'- aGGcGCGGGUGGGCGGgcGCAGAGaCGcCCGg -3'
miRNA:   3'- -CC-UGCCUGCCUGCC--UGUCUC-GCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.