Results 101 - 120 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 107257 | 0.7 | 0.614197 |
Target: 5'- -cGCGGGCGcGCGGGCAcGGGCGGgCGc -3' miRNA: 3'- ccUGCCUGCcUGCCUGU-CUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23772 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23829 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 97701 | 0.7 | 0.634032 |
Target: 5'- gGGGCGGugGGGa-GACGGcgGGUGGCCc -3' miRNA: 3'- -CCUGCCugCCUgcCUGUC--UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 2801 | 0.7 | 0.634032 |
Target: 5'- cGGCGGcCGGGagGGGCcGGGCGGCCc -3' miRNA: 3'- cCUGCCuGCCUg-CCUGuCUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 34209 | 0.7 | 0.604295 |
Target: 5'- aGACGGcgcguCGGACGcGgacGCAGAcGCGGCCGu -3' miRNA: 3'- cCUGCCu----GCCUGC-C---UGUCU-CGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 134971 | 0.71 | 0.594412 |
Target: 5'- cGACGcaGACGGcgaGGACGGGGCcGCCGg -3' miRNA: 3'- cCUGC--CUGCCug-CCUGUCUCGcUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 32925 | 0.72 | 0.526297 |
Target: 5'- gGGGCGG-CGGGCGGGgGGGG-GGCgGg -3' miRNA: 3'- -CCUGCCuGCCUGCCUgUCUCgCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 113906 | 0.72 | 0.526297 |
Target: 5'- cGGGCGcGAUGGccgaggcaGCGGGCGcGGCGACCc -3' miRNA: 3'- -CCUGC-CUGCC--------UGCCUGUcUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 104087 | 0.72 | 0.526297 |
Target: 5'- cGGCGGACaGGGCGG-CGGcgcuccgcGCGACCGc -3' miRNA: 3'- cCUGCCUG-CCUGCCuGUCu-------CGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 13092 | 0.72 | 0.535874 |
Target: 5'- cGGCGGGCGG-CGGGCucGGcucgggggcgucGGCGGCCGc -3' miRNA: 3'- cCUGCCUGCCuGCCUG--UC------------UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 127625 | 0.71 | 0.545511 |
Target: 5'- cGGcCGGcCGGACGcGACGGcGGCGgcGCCGg -3' miRNA: 3'- -CCuGCCuGCCUGC-CUGUC-UCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 26875 | 0.71 | 0.555203 |
Target: 5'- gGGGCGGG-GGugGGugGGGGgGGgCGg -3' miRNA: 3'- -CCUGCCUgCCugCCugUCUCgCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 56135 | 0.71 | 0.555203 |
Target: 5'- aGGGCGGGgGGcGCGGGCcgAGGGUGGCgGc -3' miRNA: 3'- -CCUGCCUgCC-UGCCUG--UCUCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 93676 | 0.71 | 0.555203 |
Target: 5'- cGGGCGG-CGGcGCcGGCGGGGCG-CCGg -3' miRNA: 3'- -CCUGCCuGCC-UGcCUGUCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 127313 | 0.71 | 0.562017 |
Target: 5'- uGGCGGugGGGCccugccgcccgcggGGGcCGGAGCGGCgGg -3' miRNA: 3'- cCUGCCugCCUG--------------CCU-GUCUCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 74284 | 0.71 | 0.564945 |
Target: 5'- cGGCGGGCGGGgcggucgccgcCGGGCAGcAGacgcgaGACCGg -3' miRNA: 3'- cCUGCCUGCCU-----------GCCUGUC-UCg-----CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 105002 | 0.71 | 0.564945 |
Target: 5'- -cGCGGGCGG-CGGuCGGGGCG-CCa -3' miRNA: 3'- ccUGCCUGCCuGCCuGUCUCGCuGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 132639 | 0.71 | 0.594412 |
Target: 5'- aGGacGCGGGCGcGGCGGcCcuAGCGGCCGc -3' miRNA: 3'- -CC--UGCCUGC-CUGCCuGucUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 136572 | 0.71 | 0.594412 |
Target: 5'- aGGcGCGGGUGGGCGGgcGCAGAGaCGcCCGg -3' miRNA: 3'- -CC-UGCCUGCCUGCC--UGUCUC-GCuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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