miRNA display CGI


Results 1 - 20 of 460 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23681 3' -57.6 NC_005261.1 + 71330 0.66 0.859124
Target:  5'- aCGUaGCCgGCcGCGAGCGCGuccuCGGUg -3'
miRNA:   3'- -GCA-CGG-CGuUGCUCGUGCuccuGCCG- -5'
23681 3' -57.6 NC_005261.1 + 31614 0.66 0.859124
Target:  5'- gCGUGCUGCugcucGCGA-CGCG-GGACcuGGCc -3'
miRNA:   3'- -GCACGGCGu----UGCUcGUGCuCCUG--CCG- -5'
23681 3' -57.6 NC_005261.1 + 102851 0.66 0.859124
Target:  5'- aCGUGCUGggcCAGC-AGCGCGuccAGGAaGGCg -3'
miRNA:   3'- -GCACGGC---GUUGcUCGUGC---UCCUgCCG- -5'
23681 3' -57.6 NC_005261.1 + 124754 0.66 0.859124
Target:  5'- --aGCCGCAGCGgccgccuccaGGC-UGAGGAgCGGg -3'
miRNA:   3'- gcaCGGCGUUGC----------UCGuGCUCCU-GCCg -5'
23681 3' -57.6 NC_005261.1 + 96602 0.66 0.859124
Target:  5'- -cUGCCGCAgcACGucGCGCGuGG-CGcGCa -3'
miRNA:   3'- gcACGGCGU--UGCu-CGUGCuCCuGC-CG- -5'
23681 3' -57.6 NC_005261.1 + 11059 0.66 0.859124
Target:  5'- --cGCCGCccaGGCGccgccAGCGCGucuaGGGACGGg -3'
miRNA:   3'- gcaCGGCG---UUGC-----UCGUGC----UCCUGCCg -5'
23681 3' -57.6 NC_005261.1 + 63396 0.66 0.859124
Target:  5'- --gGCCGUGGuCGAaCAUGAGGucguCGGCg -3'
miRNA:   3'- gcaCGGCGUU-GCUcGUGCUCCu---GCCG- -5'
23681 3' -57.6 NC_005261.1 + 3724 0.66 0.859124
Target:  5'- aCGcGCCGCuGCcGGaCGCGccGGCGGCg -3'
miRNA:   3'- -GCaCGGCGuUGcUC-GUGCucCUGCCG- -5'
23681 3' -57.6 NC_005261.1 + 105598 0.66 0.859124
Target:  5'- gCGUGCgCGCGACGAaCGCcu--GCGGCa -3'
miRNA:   3'- -GCACG-GCGUUGCUcGUGcuccUGCCG- -5'
23681 3' -57.6 NC_005261.1 + 115625 0.66 0.859124
Target:  5'- aCGUcGCgGCAGCGcAGCGuCGGGGGgaagaggGGCg -3'
miRNA:   3'- -GCA-CGgCGUUGC-UCGU-GCUCCUg------CCG- -5'
23681 3' -57.6 NC_005261.1 + 14994 0.66 0.859124
Target:  5'- cCG-GCCGCGcccgGAGCGCGggAGGAggaguuguCGGCg -3'
miRNA:   3'- -GCaCGGCGUug--CUCGUGC--UCCU--------GCCG- -5'
23681 3' -57.6 NC_005261.1 + 137974 0.66 0.859124
Target:  5'- -cUGCgGCGGCG-GCuGCGGcGGCGGCu -3'
miRNA:   3'- gcACGgCGUUGCuCG-UGCUcCUGCCG- -5'
23681 3' -57.6 NC_005261.1 + 74482 0.66 0.858365
Target:  5'- gCGUGCCugGGCGggaucucGGCGCucuucGGGGCGGCg -3'
miRNA:   3'- -GCACGGcgUUGC-------UCGUGc----UCCUGCCG- -5'
23681 3' -57.6 NC_005261.1 + 53556 0.66 0.856842
Target:  5'- cCGcGCCGCGgcccaggcgcacuaGCGGcCGCGGGccGGCGGCg -3'
miRNA:   3'- -GCaCGGCGU--------------UGCUcGUGCUC--CUGCCG- -5'
23681 3' -57.6 NC_005261.1 + 67809 0.66 0.856078
Target:  5'- --cGCCGCccaguggcaacuCGGGCGCGcgcAGGAgGGCc -3'
miRNA:   3'- gcaCGGCGuu----------GCUCGUGC---UCCUgCCG- -5'
23681 3' -57.6 NC_005261.1 + 82826 0.66 0.853772
Target:  5'- gGUGCCGCGcucccgcGCGgcaAGCgccuccaaguugccaGCGAaGGCGGCg -3'
miRNA:   3'- gCACGGCGU-------UGC---UCG---------------UGCUcCUGCCG- -5'
23681 3' -57.6 NC_005261.1 + 70483 0.66 0.851449
Target:  5'- gGUGCgCGCgcgUGAGCACGuagcuGGcguuCGGCg -3'
miRNA:   3'- gCACG-GCGuu-GCUCGUGCu----CCu---GCCG- -5'
23681 3' -57.6 NC_005261.1 + 129641 0.66 0.851449
Target:  5'- --gGCgGCAACGguGGCgGCGGcGGCGGCa -3'
miRNA:   3'- gcaCGgCGUUGC--UCG-UGCUcCUGCCG- -5'
23681 3' -57.6 NC_005261.1 + 44308 0.66 0.851449
Target:  5'- --gGCCGCugcccGCGGGCGCcgcagacgGGGGGCuggGGCa -3'
miRNA:   3'- gcaCGGCGu----UGCUCGUG--------CUCCUG---CCG- -5'
23681 3' -57.6 NC_005261.1 + 42166 0.66 0.851449
Target:  5'- --cGCCGgaAGCGAGC-CGuGGACgcagGGCg -3'
miRNA:   3'- gcaCGGCg-UUGCUCGuGCuCCUG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.