Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 129018 | 0.68 | 0.724235 |
|
Target: 5'- -aCGUGcgGCUGCCCGuAGCCUaCGCGGc -3' miRNA: 3'- uaGUACa-UGACGGGU-UCGGGgGUGCU- -5' |
|||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 120517 | 0.69 | 0.703946 |
|
Target: 5'- ------cGCUGCCCGAGUUCuCCGCGAc -3' miRNA: 3'- uaguacaUGACGGGUUCGGG-GGUGCU- -5' |
|||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 130695 | 0.69 | 0.683406 |
|
Target: 5'- ----cGUGCUGCUCGAGCaCCUCGcCGAg -3' miRNA: 3'- uaguaCAUGACGGGUUCG-GGGGU-GCU- -5' |
|||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 115101 | 0.74 | 0.404665 |
|
Target: 5'- -gCGUGUcggccucggcggcGCUGCCCAcGGCgCCCACGAu -3' miRNA: 3'- uaGUACA-------------UGACGGGU-UCGgGGGUGCU- -5' |
|||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 51638 | 0.74 | 0.388256 |
|
Target: 5'- -gCAaGUGCUGCCCGGGCCCgCCuuCGGc -3' miRNA: 3'- uaGUaCAUGACGGGUUCGGG-GGu-GCU- -5' |
|||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 21117 | 1.07 | 0.002667 |
|
Target: 5'- cAUCAUGUACUGCCCAAGCCCCCACGAg -3' miRNA: 3'- -UAGUACAUGACGGGUUCGGGGGUGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home