Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 94793 | 0.66 | 0.860643 |
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Target: 5'- cUCGagGUGCUGCU---GCCCCCAcCGAc -3' miRNA: 3'- uAGUa-CAUGACGGguuCGGGGGU-GCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 27402 | 0.66 | 0.860643 |
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Target: 5'- -cCAUGUuuuuaUGCaaaCGAGCCCCgACGGc -3' miRNA: 3'- uaGUACAug---ACGg--GUUCGGGGgUGCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 35627 | 0.66 | 0.860643 |
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Target: 5'- ----cGUuuCUGCCCAAGCCCCaGCc- -3' miRNA: 3'- uaguaCAu-GACGGGUUCGGGGgUGcu -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 68253 | 0.66 | 0.860643 |
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Target: 5'- uUCGUGgACUGCCUGGcgcgccugcGCCCgCGCGGc -3' miRNA: 3'- uAGUACaUGACGGGUU---------CGGGgGUGCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 109312 | 0.66 | 0.860643 |
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Target: 5'- ------aGCcGCCCuGGCCUCCGCGAg -3' miRNA: 3'- uaguacaUGaCGGGuUCGGGGGUGCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 107323 | 0.66 | 0.860643 |
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Target: 5'- -gCGUGcaGCUcGCCCAgcacGGCCUCCGCGu -3' miRNA: 3'- uaGUACa-UGA-CGGGU----UCGGGGGUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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