Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23682 | 3' | -56.4 | NC_005261.1 | + | 121369 | 0.67 | 0.792143 |
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Target: 5'- uUCGcGUACUGCa--GGCgCCCCGCGGc -3' miRNA: 3'- uAGUaCAUGACGgguUCG-GGGGUGCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 122066 | 0.67 | 0.801322 |
|
Target: 5'- gAUCAUGUACgggucgcgcacGCCCGcgcgcAGCCagcaggcguagCCCACGAa -3' miRNA: 3'- -UAGUACAUGa----------CGGGU-----UCGG-----------GGGUGCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 129018 | 0.68 | 0.724235 |
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Target: 5'- -aCGUGcgGCUGCCCGuAGCCUaCGCGGc -3' miRNA: 3'- uaGUACa-UGACGGGU-UCGGGgGUGCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 130695 | 0.69 | 0.683406 |
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Target: 5'- ----cGUGCUGCUCGAGCaCCUCGcCGAg -3' miRNA: 3'- uaguaCAUGACGGGUUCG-GGGGU-GCU- -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 134331 | 0.67 | 0.792143 |
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Target: 5'- gGUCucgcUGCUGUaccgCAAGCCCCCGCGc -3' miRNA: 3'- -UAGuac-AUGACGg---GUUCGGGGGUGCu -5' |
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| 23682 | 3' | -56.4 | NC_005261.1 | + | 134862 | 0.67 | 0.810341 |
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Target: 5'- -aCAag-GC-GCCCGcGCCCCCGCGGg -3' miRNA: 3'- uaGUacaUGaCGGGUuCGGGGGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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