miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23682 5' -58 NC_005261.1 + 32073 0.66 0.789868
Target:  5'- --gAGCGCGGCgCUggggcucggggaGCCGGacuucGCGGAGGg -3'
miRNA:   3'- uaaUCGUGCCGgGA------------CGGCU-----CGUCUCU- -5'
23682 5' -58 NC_005261.1 + 12343 0.66 0.789868
Target:  5'- --cGGCGCGGCCgCcGCCGcGGCGGc-- -3'
miRNA:   3'- uaaUCGUGCCGG-GaCGGC-UCGUCucu -5'
23682 5' -58 NC_005261.1 + 108429 0.66 0.789868
Target:  5'- ---uGCACGGCaaccgcgucCCgGCCGAGCAGc-- -3'
miRNA:   3'- uaauCGUGCCG---------GGaCGGCUCGUCucu -5'
23682 5' -58 NC_005261.1 + 13942 0.66 0.780572
Target:  5'- ---cGCguuGCGGCCCaGCCGcGCGGAa- -3'
miRNA:   3'- uaauCG---UGCCGGGaCGGCuCGUCUcu -5'
23682 5' -58 NC_005261.1 + 36950 0.66 0.780572
Target:  5'- -cUGGCGCaaGGCCC-GCCGcgcggcGCAGAGc -3'
miRNA:   3'- uaAUCGUG--CCGGGaCGGCu-----CGUCUCu -5'
23682 5' -58 NC_005261.1 + 23506 0.66 0.774928
Target:  5'- --aGGCGCgGGCCCUgggagcacgcggucgGgCGAGCGGcAGAg -3'
miRNA:   3'- uaaUCGUG-CCGGGA---------------CgGCUCGUC-UCU- -5'
23682 5' -58 NC_005261.1 + 17550 0.66 0.77114
Target:  5'- --cGGCGCgGGCCC-GCCGuucGGCGGuGGc -3'
miRNA:   3'- uaaUCGUG-CCGGGaCGGC---UCGUCuCU- -5'
23682 5' -58 NC_005261.1 + 75826 0.66 0.77114
Target:  5'- --cGGCGCGGCCgC-GcCCGGGgAGGGGc -3'
miRNA:   3'- uaaUCGUGCCGG-GaC-GGCUCgUCUCU- -5'
23682 5' -58 NC_005261.1 + 36553 0.66 0.77114
Target:  5'- --gGGCGgGGCgagCCUaGCCGAGCuGAGc -3'
miRNA:   3'- uaaUCGUgCCG---GGA-CGGCUCGuCUCu -5'
23682 5' -58 NC_005261.1 + 107669 0.66 0.768285
Target:  5'- ----cCGCGGCCCcGCCGGGCguugccgccgcggcGGGGGc -3'
miRNA:   3'- uaaucGUGCCGGGaCGGCUCG--------------UCUCU- -5'
23682 5' -58 NC_005261.1 + 66310 0.66 0.761581
Target:  5'- --cGGCACGGCCaccgaggcgGCCGuGCAGc-- -3'
miRNA:   3'- uaaUCGUGCCGGga-------CGGCuCGUCucu -5'
23682 5' -58 NC_005261.1 + 62885 0.66 0.761581
Target:  5'- --cGGCGCaGCCCgcgcgagGCgGGGCGGGGc -3'
miRNA:   3'- uaaUCGUGcCGGGa------CGgCUCGUCUCu -5'
23682 5' -58 NC_005261.1 + 123219 0.66 0.761581
Target:  5'- --aAGCGCGG-CCUGCCGccuAGCGGc-- -3'
miRNA:   3'- uaaUCGUGCCgGGACGGC---UCGUCucu -5'
23682 5' -58 NC_005261.1 + 89773 0.66 0.761581
Target:  5'- -gUGGCcgaggaGGCCCUGCgGgAGCGGAa- -3'
miRNA:   3'- uaAUCGug----CCGGGACGgC-UCGUCUcu -5'
23682 5' -58 NC_005261.1 + 44739 0.66 0.760618
Target:  5'- --cAGCugGGCCCcgaGCUgcgcgcgacccggGAGCGGAGc -3'
miRNA:   3'- uaaUCGugCCGGGa--CGG-------------CUCGUCUCu -5'
23682 5' -58 NC_005261.1 + 18739 0.66 0.751904
Target:  5'- --gGGCgccccaaaacaGCGGCCCcGCaGAGCAGGGc -3'
miRNA:   3'- uaaUCG-----------UGCCGGGaCGgCUCGUCUCu -5'
23682 5' -58 NC_005261.1 + 25382 0.66 0.751904
Target:  5'- --cGGCACGGCgCgcggGUCGGGggaGGAGAg -3'
miRNA:   3'- uaaUCGUGCCGgGa---CGGCUCg--UCUCU- -5'
23682 5' -58 NC_005261.1 + 62809 0.66 0.751904
Target:  5'- --gGGCugGGCCauaucGCCGcGCGGGGc -3'
miRNA:   3'- uaaUCGugCCGGga---CGGCuCGUCUCu -5'
23682 5' -58 NC_005261.1 + 130330 0.66 0.751904
Target:  5'- -aUGG-ACGGCCCgGCCGcGCucGGGGAc -3'
miRNA:   3'- uaAUCgUGCCGGGaCGGCuCG--UCUCU- -5'
23682 5' -58 NC_005261.1 + 109243 0.66 0.751904
Target:  5'- --cAGCGCGGCCCagUGCgGGGCcacGAa -3'
miRNA:   3'- uaaUCGUGCCGGG--ACGgCUCGucuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.