miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23683 3' -53.9 NC_005261.1 + 20359 1.07 0.005001
Target:  5'- cCGCGAGCCGUACUUAAGCCUCACCAUg -3'
miRNA:   3'- -GCGCUCGGCAUGAAUUCGGAGUGGUA- -5'
23683 3' -53.9 NC_005261.1 + 31838 0.76 0.454639
Target:  5'- gCGCGcGCCGUGCU--GGCCUCGCgGc -3'
miRNA:   3'- -GCGCuCGGCAUGAauUCGGAGUGgUa -5'
23683 3' -53.9 NC_005261.1 + 87491 0.74 0.575028
Target:  5'- gCGCG-GCCGUGCUggcgcgcAGGCgCUCGCCGc -3'
miRNA:   3'- -GCGCuCGGCAUGAa------UUCG-GAGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 116894 0.74 0.575028
Target:  5'- gCGCGGGCCGU-CUU---CCUCGCCAa -3'
miRNA:   3'- -GCGCUCGGCAuGAAuucGGAGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 2216 0.72 0.638185
Target:  5'- cCGCGAGCagGUGCgaGAGCC-CGCCGc -3'
miRNA:   3'- -GCGCUCGg-CAUGaaUUCGGaGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 100882 0.72 0.680296
Target:  5'- gCGCGcAGCCccucGUACgc-GGCCUCGCCGc -3'
miRNA:   3'- -GCGC-UCGG----CAUGaauUCGGAGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 76659 0.71 0.710437
Target:  5'- uGCGAggucggcGCCGUGCU--GGCCcUCGCCGa -3'
miRNA:   3'- gCGCU-------CGGCAUGAauUCGG-AGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 91124 0.71 0.711468
Target:  5'- uCGCGcGCCGcgGCcgAGGCCUCAgCCGUg -3'
miRNA:   3'- -GCGCuCGGCa-UGaaUUCGGAGU-GGUA- -5'
23683 3' -53.9 NC_005261.1 + 48381 0.71 0.731906
Target:  5'- gCGCaGGCUGUACUUGGGgCUCGCgAa -3'
miRNA:   3'- -GCGcUCGGCAUGAAUUCgGAGUGgUa -5'
23683 3' -53.9 NC_005261.1 + 102769 0.7 0.761847
Target:  5'- aCGCGAGCgCGcccg-AGGCCUCGCCc- -3'
miRNA:   3'- -GCGCUCG-GCaugaaUUCGGAGUGGua -5'
23683 3' -53.9 NC_005261.1 + 88474 0.7 0.771597
Target:  5'- gGCGGGCCGUGCcgc-GCCggagcgCGCCGc -3'
miRNA:   3'- gCGCUCGGCAUGaauuCGGa-----GUGGUa -5'
23683 3' -53.9 NC_005261.1 + 40673 0.7 0.781213
Target:  5'- cCGCGAcGCCGU-CgggGAGCCggCGCCGg -3'
miRNA:   3'- -GCGCU-CGGCAuGaa-UUCGGa-GUGGUa -5'
23683 3' -53.9 NC_005261.1 + 4413 0.69 0.800009
Target:  5'- gCGCGcuGCCGgGCc-AGGCCUCGCCGg -3'
miRNA:   3'- -GCGCu-CGGCaUGaaUUCGGAGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 2752 0.69 0.809169
Target:  5'- gGCGGGCCGUcGCggcGGGCCUCgagGCCc- -3'
miRNA:   3'- gCGCUCGGCA-UGaa-UUCGGAG---UGGua -5'
23683 3' -53.9 NC_005261.1 + 131068 0.69 0.818158
Target:  5'- uGCaGGCCGUGCgggacuGCCUgGCCAc -3'
miRNA:   3'- gCGcUCGGCAUGaauu--CGGAgUGGUa -5'
23683 3' -53.9 NC_005261.1 + 41796 0.69 0.826967
Target:  5'- gGCaGGCCGUACUcgaguguuuUGAGCagCUCGCCGa -3'
miRNA:   3'- gCGcUCGGCAUGA---------AUUCG--GAGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 95711 0.69 0.835588
Target:  5'- gCGCGGGCuCGcGCUcGGGCC-CGCCGc -3'
miRNA:   3'- -GCGCUCG-GCaUGAaUUCGGaGUGGUa -5'
23683 3' -53.9 NC_005261.1 + 32246 0.69 0.844011
Target:  5'- gCGCG-GCCGcGCUgcugGAGCCgcaCGCCGa -3'
miRNA:   3'- -GCGCuCGGCaUGAa---UUCGGa--GUGGUa -5'
23683 3' -53.9 NC_005261.1 + 42173 0.68 0.852229
Target:  5'- aGCGAGCCGUggacgcaggGCgcGAGCCgcuccacggCGCCGc -3'
miRNA:   3'- gCGCUCGGCA---------UGaaUUCGGa--------GUGGUa -5'
23683 3' -53.9 NC_005261.1 + 110617 0.68 0.852229
Target:  5'- aCGcCGAGCUGcgGCUgGAGCC-CGCCGg -3'
miRNA:   3'- -GC-GCUCGGCa-UGAaUUCGGaGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.