miRNA display CGI


Results 1 - 20 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 3' -60.4 NC_005261.1 + 19041 0.66 0.707759
Target:  5'- gCCGgagaGCCgccaggcagggguaCGGGCuGCGCGGCUCUCg -3'
miRNA:   3'- gGGCag--CGGa-------------GCUUG-UGCGCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 96070 0.66 0.703892
Target:  5'- -aCGaCGCC-CGAGCAggugagUGCGGCCCg- -3'
miRNA:   3'- ggGCaGCGGaGCUUGU------GCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 121538 0.66 0.703892
Target:  5'- cCUCGUCGCUgucgGAGC-CGCcGUCCUCg -3'
miRNA:   3'- -GGGCAGCGGag--CUUGuGCGcCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 100708 0.66 0.713542
Target:  5'- gCgCGcCGCC-CGAGC-CGCGGCCg-- -3'
miRNA:   3'- -GgGCaGCGGaGCUUGuGCGCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 13991 0.66 0.703892
Target:  5'- cCCUGUCGCCcgcCGGAU-CG-GGCCgCUCg -3'
miRNA:   3'- -GGGCAGCGGa--GCUUGuGCgCCGG-GAG- -5'
23684 3' -60.4 NC_005261.1 + 45552 0.66 0.703892
Target:  5'- gCUGUUGCC-CGGcugcuGCugGCGGCCg-- -3'
miRNA:   3'- gGGCAGCGGaGCU-----UGugCGCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 86855 0.66 0.713542
Target:  5'- gCCGgcgcucaaCGCCgcCGGGCGCgGCGGCCUUg -3'
miRNA:   3'- gGGCa-------GCGGa-GCUUGUG-CGCCGGGAg -5'
23684 3' -60.4 NC_005261.1 + 67944 0.66 0.703892
Target:  5'- cCCCGcCgGCC-CGcuCGCGCGGCCg-- -3'
miRNA:   3'- -GGGCaG-CGGaGCuuGUGCGCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 16370 0.66 0.703892
Target:  5'- cCCCGcCGCCUUcu-C-CGUGGgCCUCg -3'
miRNA:   3'- -GGGCaGCGGAGcuuGuGCGCCgGGAG- -5'
23684 3' -60.4 NC_005261.1 + 99440 0.66 0.75141
Target:  5'- cCCCGUCGgg-CGGAagaGCGCGGgCCg- -3'
miRNA:   3'- -GGGCAGCggaGCUUg--UGCGCCgGGag -5'
23684 3' -60.4 NC_005261.1 + 7054 0.66 0.713542
Target:  5'- cUCCG-CGUC-CGGGCGUGUGGCCCa- -3'
miRNA:   3'- -GGGCaGCGGaGCUUGUGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 49298 0.66 0.713542
Target:  5'- gCCCG-CGgCggUGAGCgccGCGCaGCCCUCg -3'
miRNA:   3'- -GGGCaGCgGa-GCUUG---UGCGcCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 38749 0.66 0.71258
Target:  5'- gCCCG-CGCCagagcCGGACccggacuGCGUGGCUUUCg -3'
miRNA:   3'- -GGGCaGCGGa----GCUUG-------UGCGCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 53537 0.66 0.703892
Target:  5'- gCCGUguugCGCUcuUCGGccGCGcCGCGGCCCa- -3'
miRNA:   3'- gGGCA----GCGG--AGCU--UGU-GCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 102559 0.66 0.703892
Target:  5'- gCCCGgcggacacCGCCUCGccgucCGCGuCGGCggCCUCg -3'
miRNA:   3'- -GGGCa-------GCGGAGCuu---GUGC-GCCG--GGAG- -5'
23684 3' -60.4 NC_005261.1 + 122354 0.66 0.713542
Target:  5'- gCCUGgcgGCCgCGGcuCGCGCGGCCC-Ca -3'
miRNA:   3'- -GGGCag-CGGaGCUu-GUGCGCCGGGaG- -5'
23684 3' -60.4 NC_005261.1 + 19898 0.66 0.713542
Target:  5'- cCCCaGUCGCCgUCGu---CGCucucGCCCUCg -3'
miRNA:   3'- -GGG-CAGCGG-AGCuuguGCGc---CGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 106491 0.66 0.713542
Target:  5'- cCUCGUCGCCcUGGACuuccgaGUaGCCCUCc -3'
miRNA:   3'- -GGGCAGCGGaGCUUGug----CGcCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 21866 0.66 0.703892
Target:  5'- gCUCG-CGCUcgCGAACGCGCG-CCCg- -3'
miRNA:   3'- -GGGCaGCGGa-GCUUGUGCGCcGGGag -5'
23684 3' -60.4 NC_005261.1 + 132083 0.66 0.703892
Target:  5'- gCCGUCGCCgcugccgCGGAgG-GCGGCCg-- -3'
miRNA:   3'- gGGCAGCGGa------GCUUgUgCGCCGGgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.