miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 3' -60.4 NC_005261.1 + 1303 0.73 0.362706
Target:  5'- uCCCGUCGCCggCGGcgGCACGCGcUCCg- -3'
miRNA:   3'- -GGGCAGCGGa-GCU--UGUGCGCcGGGag -5'
23684 3' -60.4 NC_005261.1 + 1683 0.66 0.75141
Target:  5'- gCCCGUCgaGCCgCGGcaGCACGCGcuGCCgguaCUCg -3'
miRNA:   3'- -GGGCAG--CGGaGCU--UGUGCGC--CGG----GAG- -5'
23684 3' -60.4 NC_005261.1 + 2726 0.67 0.68541
Target:  5'- cCCCGgccgacuugcgcuugCGCCgcggCGGGCcguCGCGGCgggCCUCg -3'
miRNA:   3'- -GGGCa--------------GCGGa---GCUUGu--GCGCCG---GGAG- -5'
23684 3' -60.4 NC_005261.1 + 3004 0.69 0.566387
Target:  5'- gCCCGgCGCCg-GGGCuccCGCGGgCCUCc -3'
miRNA:   3'- -GGGCaGCGGagCUUGu--GCGCCgGGAG- -5'
23684 3' -60.4 NC_005261.1 + 3339 0.74 0.297973
Target:  5'- aCCCG-CGCCgcggCGcccGGCGCGcCGGCCUUCa -3'
miRNA:   3'- -GGGCaGCGGa---GC---UUGUGC-GCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 3516 0.67 0.654959
Target:  5'- gCgGcCGCCUCcAGCGCgGCGGCcgCCUCg -3'
miRNA:   3'- gGgCaGCGGAGcUUGUG-CGCCG--GGAG- -5'
23684 3' -60.4 NC_005261.1 + 4303 0.74 0.304702
Target:  5'- cCCCGcggcCGCCgCGuAGCGCGCGGCcgCCUCg -3'
miRNA:   3'- -GGGCa---GCGGaGC-UUGUGCGCCG--GGAG- -5'
23684 3' -60.4 NC_005261.1 + 4375 0.73 0.325585
Target:  5'- gCCCG-CGCCgcCGAagcGCACGCGGCCg-- -3'
miRNA:   3'- -GGGCaGCGGa-GCU---UGUGCGCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 4521 0.71 0.454132
Target:  5'- gCCCGcgcgggCGCCgcggCGAGgGCGCcgGGCCCUg -3'
miRNA:   3'- -GGGCa-----GCGGa---GCUUgUGCG--CCGGGAg -5'
23684 3' -60.4 NC_005261.1 + 4880 0.66 0.742069
Target:  5'- aCgGcCGCCUC-AGC-CGCGGCcgCCUCg -3'
miRNA:   3'- gGgCaGCGGAGcUUGuGCGCCG--GGAG- -5'
23684 3' -60.4 NC_005261.1 + 4934 0.67 0.654959
Target:  5'- gCCGcgagCGCC-CGcGC-CGCGGCCCa- -3'
miRNA:   3'- gGGCa---GCGGaGCuUGuGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 5158 0.66 0.742069
Target:  5'- gCCCGgcgggcCGCgUCGAGCAgGgccgGGUCCUCc -3'
miRNA:   3'- -GGGCa-----GCGgAGCUUGUgCg---CCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 6273 0.69 0.575162
Target:  5'- gCCCGcCGCCaaacucaUUGuaauAUGCGCGGCCgUCg -3'
miRNA:   3'- -GGGCaGCGG-------AGCu---UGUGCGCCGGgAG- -5'
23684 3' -60.4 NC_005261.1 + 6389 0.67 0.674638
Target:  5'- cCCCGUucCGCCcccUUGAcccGCGCGCguuGGCCCg- -3'
miRNA:   3'- -GGGCA--GCGG---AGCU---UGUGCG---CCGGGag -5'
23684 3' -60.4 NC_005261.1 + 7054 0.66 0.713542
Target:  5'- cUCCG-CGUC-CGGGCGUGUGGCCCa- -3'
miRNA:   3'- -GGGCaGCGGaGCUUGUGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 9980 0.72 0.370474
Target:  5'- cCCCGgacgCGCCUCG---GCGCGGCCa-- -3'
miRNA:   3'- -GGGCa---GCGGAGCuugUGCGCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 10004 0.68 0.605594
Target:  5'- aCCCGcUUGCCaccCGAcCGgGCGGgCCUCg -3'
miRNA:   3'- -GGGC-AGCGGa--GCUuGUgCGCCgGGAG- -5'
23684 3' -60.4 NC_005261.1 + 10467 0.68 0.615458
Target:  5'- gCUC-UCGCC-CGAGCAgGcCGGCCCg- -3'
miRNA:   3'- -GGGcAGCGGaGCUUGUgC-GCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 10542 0.67 0.674638
Target:  5'- gCUGUCGCCcCcGGCGCGCcugccgGGCCCa- -3'
miRNA:   3'- gGGCAGCGGaGcUUGUGCG------CCGGGag -5'
23684 3' -60.4 NC_005261.1 + 10982 0.68 0.585928
Target:  5'- cCCCG-CGCC-CGAcugGCGCuGGUCCUCc -3'
miRNA:   3'- -GGGCaGCGGaGCUug-UGCG-CCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.