miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 3' -60.4 NC_005261.1 + 59145 0.75 0.266058
Target:  5'- gCCGgcgCGCCcCGGGCGCGCGGCgCC-Cg -3'
miRNA:   3'- gGGCa--GCGGaGCUUGUGCGCCG-GGaG- -5'
23684 3' -60.4 NC_005261.1 + 99440 0.66 0.75141
Target:  5'- cCCCGUCGgg-CGGAagaGCGCGGgCCg- -3'
miRNA:   3'- -GGGCAGCggaGCUUg--UGCGCCgGGag -5'
23684 3' -60.4 NC_005261.1 + 73209 0.74 0.318508
Target:  5'- cCCCGggCGCCUCGAgggGCGCGgUGGCCg-- -3'
miRNA:   3'- -GGGCa-GCGGAGCU---UGUGC-GCCGGgag -5'
23684 3' -60.4 NC_005261.1 + 55776 0.74 0.318508
Target:  5'- gCCCGgaucUGCCcccccaagUCGcGGCGCGCGGCCUUCg -3'
miRNA:   3'- -GGGCa---GCGG--------AGC-UUGUGCGCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 42950 0.74 0.311547
Target:  5'- aCCCGaCGCCgc--GCACGCGGCUCUUc -3'
miRNA:   3'- -GGGCaGCGGagcuUGUGCGCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 118368 0.74 0.304702
Target:  5'- gCCGggCGCUg-GGGCGCGCGGCCCg- -3'
miRNA:   3'- gGGCa-GCGGagCUUGUGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 4303 0.74 0.304702
Target:  5'- cCCCGcggcCGCCgCGuAGCGCGCGGCcgCCUCg -3'
miRNA:   3'- -GGGCa---GCGGaGC-UUGUGCGCCG--GGAG- -5'
23684 3' -60.4 NC_005261.1 + 3339 0.74 0.297973
Target:  5'- aCCCG-CGCCgcggCGcccGGCGCGcCGGCCUUCa -3'
miRNA:   3'- -GGGCaGCGGa---GC---UUGUGC-GCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 32728 0.74 0.29136
Target:  5'- cCCCGUCuCCgucCGcucuGCGCGCGGCCCg- -3'
miRNA:   3'- -GGGCAGcGGa--GCu---UGUGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 37740 0.74 0.284863
Target:  5'- cCCCGUCGCCccccgCGGGCGcCGCGccGCCCa- -3'
miRNA:   3'- -GGGCAGCGGa----GCUUGU-GCGC--CGGGag -5'
23684 3' -60.4 NC_005261.1 + 107874 0.75 0.272212
Target:  5'- gCCCG-CGCgCUCGcGCcCGCGGCCCg- -3'
miRNA:   3'- -GGGCaGCG-GAGCuUGuGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 19774 1.1 0.001098
Target:  5'- cCCCGUCGCCUCGAACACGCGGCCCUCc -3'
miRNA:   3'- -GGGCAGCGGAGCUUGUGCGCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 73588 0.75 0.253502
Target:  5'- cCCCG-CggcggaggcggcgGCCgCGAGCGCGCGGCCCgUCg -3'
miRNA:   3'- -GGGCaG-------------CGGaGCUUGUGCGCCGGG-AG- -5'
23684 3' -60.4 NC_005261.1 + 126534 0.75 0.242564
Target:  5'- gCCCGccgCGCCUCGGcCACGCGccGCCgUCg -3'
miRNA:   3'- -GGGCa--GCGGAGCUuGUGCGC--CGGgAG- -5'
23684 3' -60.4 NC_005261.1 + 90100 0.75 0.242564
Target:  5'- gCCCGuUCGCCggcUGGGCcgACGCGGCCCg- -3'
miRNA:   3'- -GGGC-AGCGGa--GCUUG--UGCGCCGGGag -5'
23684 3' -60.4 NC_005261.1 + 94636 0.76 0.236967
Target:  5'- gCCGUCGUCggcgcgcgCGAACAUGCGGCUC-Cg -3'
miRNA:   3'- gGGCAGCGGa-------GCUUGUGCGCCGGGaG- -5'
23684 3' -60.4 NC_005261.1 + 56753 0.76 0.231479
Target:  5'- gCgUGUCGCCUUcAACACGcCGGCCUUCu -3'
miRNA:   3'- -GgGCAGCGGAGcUUGUGC-GCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 105296 0.77 0.191343
Target:  5'- gCCCGggCGCg-CGAGCGCGgGGUCCUCg -3'
miRNA:   3'- -GGGCa-GCGgaGCUUGUGCgCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 93027 0.77 0.186779
Target:  5'- gCCCacaaGCCcgCGcACACGCGGCCCUCg -3'
miRNA:   3'- -GGGcag-CGGa-GCuUGUGCGCCGGGAG- -5'
23684 3' -60.4 NC_005261.1 + 12710 0.77 0.186779
Target:  5'- gCCCGagCGgCUCGGGCGCGCGGgCCCg- -3'
miRNA:   3'- -GGGCa-GCgGAGCUUGUGCGCC-GGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.