miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23684 5' -54.5 NC_005261.1 + 2789 0.66 0.948529
Target:  5'- aGGGgCuGCCGCCGG-CGGccGgGAGGGg -3'
miRNA:   3'- -CCCaGuCGGCGGCCaGCUa-CgUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 5342 0.78 0.362135
Target:  5'- cGGGUCGGCCagccgGCUGGUCGGUGgAuacGGAGa -3'
miRNA:   3'- -CCCAGUCGG-----CGGCCAGCUACgU---UUUC- -5'
23684 5' -54.5 NC_005261.1 + 15430 0.69 0.806459
Target:  5'- -aGUCGGCCgggcgcggGCCGG-CGAUGgAGAAGa -3'
miRNA:   3'- ccCAGUCGG--------CGGCCaGCUACgUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 16397 0.74 0.576545
Target:  5'- -cGUCGucGUCGCCGGgCGGUGCGGGAGa -3'
miRNA:   3'- ccCAGU--CGGCGGCCaGCUACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 19112 0.76 0.448921
Target:  5'- cGGGUCAGCCgGUCGGUgGGgcuagGCGGGAa -3'
miRNA:   3'- -CCCAGUCGG-CGGCCAgCUa----CGUUUUc -5'
23684 5' -54.5 NC_005261.1 + 19808 1.1 0.003072
Target:  5'- gGGGUCAGCCGCCGGUCGAUGCAAAAGu -3'
miRNA:   3'- -CCCAGUCGGCGGCCAGCUACGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 21792 0.67 0.90636
Target:  5'- cGGGccgccgCAGCCGCCGGcCGG-GCc---- -3'
miRNA:   3'- -CCCa-----GUCGGCGGCCaGCUaCGuuuuc -5'
23684 5' -54.5 NC_005261.1 + 23361 0.69 0.830009
Target:  5'- -uGUCGGCCgugacaaacgccgaGCCGGUggCGAUGCAgcaGAAGa -3'
miRNA:   3'- ccCAGUCGG--------------CGGCCA--GCUACGU---UUUC- -5'
23684 5' -54.5 NC_005261.1 + 31037 0.67 0.90636
Target:  5'- cGG-CGcGCCGCCGGguccccagCGcgGCGGGAGc -3'
miRNA:   3'- cCCaGU-CGGCGGCCa-------GCuaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 31481 0.66 0.944109
Target:  5'- ----uGGCCGCCGGUgCGcgGCGGGc- -3'
miRNA:   3'- cccagUCGGCGGCCA-GCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 36668 0.71 0.73045
Target:  5'- aGGGUCGaaCGCUGGggCGGUGCuGAAGu -3'
miRNA:   3'- -CCCAGUcgGCGGCCa-GCUACGuUUUC- -5'
23684 5' -54.5 NC_005261.1 + 39979 0.68 0.879488
Target:  5'- cGGGUUGcgcgcGCCGCCGG-CG-UGCGuGAAGg -3'
miRNA:   3'- -CCCAGU-----CGGCGGCCaGCuACGU-UUUC- -5'
23684 5' -54.5 NC_005261.1 + 43182 0.69 0.806459
Target:  5'- cGG-C-GCCGCCGG-CGAgGCAGAGGu -3'
miRNA:   3'- cCCaGuCGGCGGCCaGCUaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 49242 0.71 0.720456
Target:  5'- aGGUCGGCCGCCGccgcggcggcGUCGgcGCGc--- -3'
miRNA:   3'- cCCAGUCGGCGGC----------CAGCuaCGUuuuc -5'
23684 5' -54.5 NC_005261.1 + 49531 0.66 0.939448
Target:  5'- cGGGcCAGCCGCCGucCGcgGCc---- -3'
miRNA:   3'- -CCCaGUCGGCGGCcaGCuaCGuuuuc -5'
23684 5' -54.5 NC_005261.1 + 50024 0.69 0.815328
Target:  5'- cGGGcgccCAGCCGCCGcGcgaCGGUGCAGc-- -3'
miRNA:   3'- -CCCa---GUCGGCGGC-Ca--GCUACGUUuuc -5'
23684 5' -54.5 NC_005261.1 + 54843 0.68 0.864681
Target:  5'- aGGGcUAGCUGCCGG-CGccGCAGGc- -3'
miRNA:   3'- -CCCaGUCGGCGGCCaGCuaCGUUUuc -5'
23684 5' -54.5 NC_005261.1 + 58287 0.71 0.740356
Target:  5'- gGGGcCGGCgCGCCGGggggCGcgGgGAGGGg -3'
miRNA:   3'- -CCCaGUCG-GCGGCCa---GCuaCgUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 59221 0.66 0.924004
Target:  5'- -cGUCucguaguGCCGCCGGgccaCGA-GCGAGAGc -3'
miRNA:   3'- ccCAGu------CGGCGGCCa---GCUaCGUUUUC- -5'
23684 5' -54.5 NC_005261.1 + 59345 0.66 0.948529
Target:  5'- cGGGUC-GCCGCC-GUCGccaCGAGGGu -3'
miRNA:   3'- -CCCAGuCGGCGGcCAGCuacGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.